Describe the bug
ARGOS_000022 corresponds to the Pond Team assemblyQC table (Galaxy)
ARG_000001 Corresponds to Pond Team Wuhan Fasta (Galaxy)
It seems like in both of these issues, the 'filename' field in the BCO are written out as steps rather than a file name with a media type. I believe The URI warning is occurring because the script is looking for a file name referenced in the URI - but the filename field is text, there isn't a reference to an actual file, and this isn't represented in the URI.
Long term this should be addressed in Galaxy and the BCO converter. Short term - these fields could be edited or removed to be compliant to the BCO standards. However, being that they are WARNINGS and not FATAL, it might be okay for now.
Taken from https://github.com/FDA-ARGOS/argos-vm-dev/issues/16
Describe the bug ARGOS_000022 corresponds to the Pond Team assemblyQC table (Galaxy) ARG_000001 Corresponds to Pond Team Wuhan Fasta (Galaxy)
It seems like in both of these issues, the 'filename' field in the BCO are written out as steps rather than a file name with a media type. I believe The URI warning is occurring because the script is looking for a file name referenced in the URI - but the filename field is text, there isn't a reference to an actual file, and this isn't represented in the URI.
Long term this should be addressed in Galaxy and the BCO converter. Short term - these fields could be edited or removed to be compliant to the BCO standards. However, being that they are WARNINGS and not FATAL, it might be okay for now.