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biocompute-objects / portal_userdb

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HIVE BCO Export #182

Open ChinweokeO opened 1 year ago

ChinweokeO commented 1 year ago

API driven export of workflow from HIVE using BCO portal

HadleyKing commented 1 year ago

API based microservice

ChinweokeO commented 12 months ago

May be included in BioCompute Paper, discussing technical aspects of BioCompute

HadleyKing commented 11 months ago

Instructions for deploying your own containerized HIVE are here: https://github.com/FDA-ARGOS/GWProd/tree/deploy-testing/docker-deploy/singularity-sandbox You'll need four files, which can be found in the HIVE3 back end in /home/transferFolder/

Note that when it asks for "Database host" you'll have to give it 127.0.0.1, I don't think this is in the readme yet:

Database host? [qpridesrv or localhost]: 127.0.0.1

I've also cc'ed Pat in case there's any questions.

HadleyKing commented 11 months ago

I'd recommend sticking with Docker rather than Singularity if that's an option. The instructions are here.

The Docker steps in section " Run deploy initial and deploy www" are listed in the Singularity documentation, step 7.

The mariaDB container will need you to run step 5 in the Singularity documentation to initialize the database and launch the daemon.