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biocompute-objects / portal_userdb

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GATK workflows #362

Open ChinweokeO opened 1 month ago

ChinweokeO commented 1 month ago

https://github.com/gatk-workflows https://github.com/gatk-workflows/gatk4-rnaseq-germline-snps-indels

Kirans0615 commented 1 month ago

Pipeline for somatic variant discovery -https://bitbucket.org/BBDA-UNIBO/wes-pipeline a. The alignments were submitted to local realignment around INDELs and base quality score recalibration (BQSR) by using the Genome Analysis Toolkit (GATK) version 3.0 b. https://link.springer.com/article/10.1186/s12859-016-1190-7

Kirans0615 commented 1 month ago

https://ieeexplore.ieee.org/abstract/document/7359893 (Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline)