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biocompute-objects / portal_userdb

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Nextflow pipelines #389

Open ChinweokeO opened 5 months ago

ChinweokeO commented 5 months ago

[ ] Check for GDC pipeline in nf-core or make one
[ ] Check for trainings/workshops for learning purposes and share with the team

tiwa1154 commented 3 months ago

https://bioinformaticsworkbook.org/dataAnalysis/nextflow/02_creatingAworkflow.html#gsc.tab=0 Bioinformatics Workbook Creating a NextFlow workflow A workbook to help scientists working on bioinformatics projects (719 kB) https://bioinformaticsworkbook.org/dataAnalysis/nextflow/02_creatingAworkflow.html#gsc.tab=0

(https://hivelab.slack.com/archives/D05G20HK9PV/p1723732495692279) https://www.nextflow.io/docs/latest/config.html (https://hivelab.slack.com/archives/D05G20HK9PV/p1723732621890159) https://docs.google.com/document/d/1XrjZ0z3BaM-vV6yBvxP_6_pqCJ3OhB3pNOKzWRyeqIU/edit?usp=sharing New (https://hivelab.slack.com/archives/D05G20HK9PV/p1723732676525219) https://docs.google.com/document/d/1VSzMim3m8J4HcDgBiWp6J83Wog-J4vH2AwwbeOSpo8Y/edit#heading=h.q0mh6udlqb28

tiwa1154 commented 1 month ago

[ ] Replicate RNA-seq workfliw from paper and update BCO in DB #419
[ ] Potential BCO workflows #359

tiwa1154 commented 3 weeks ago

Messaged Kiran to ask for blockers

tiwa1154 commented 1 week ago

https://nf-co.re/viralrecon/2.6.0/