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biocompute-objects / portal_userdb

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CFDE Playbook NCE and Carryover of Milestones #395

Open HadleyKing opened 4 weeks ago

HadleyKing commented 4 weeks ago

Coordinate API development with the BioCompute portal

kee007ney commented 3 weeks ago

Added bco_api#333 to ticket, related to #397. Background information is below:

Need to convert BCO data into Linked Data Hub format for users of LDH.

  1. Define a schema to represent BCO data
    • Use https://ldh.clinicalgenome.org/ldh/ui/api-docs to find the relevant fields
    • Map fields from BCO to fields in LDH
    • Find a "catch all" field for BCO fields that don't map well (BCO is for workflows and LDH is for data, so there will be many)
  2. Write a conversion script that will take BCO data and convert it into LDH-ready format
    • This may be hosted as an API endpoint on the BioCompute server so data can be requested programmatically

This is part of the CFDE project.