Closed simonvh closed 5 years ago
I get the following error (for full details see here):
[Mar 19 11:45:24] DEBU Creating container [step-54cc080860] [Mar 19 11:45:24] DEBU Created container [6ad88087a20b step-54cc080860], starting it [Mar 19 11:45:24] DEBU Container [6ad88087a20b step-54cc080860] started, waiting for completion [Mar 19 11:45:24] SERR /usr/local/lib/python3.6/site-packages/norns-0.1.2-py2.7.egg/norns/cfg.py:72: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details. [Mar 19 11:45:24] SERR Traceback (most recent call last): [Mar 19 11:45:24] SERR File "/usr/local/bin/genomepy", line 11, in <module> [Mar 19 11:45:24] SERR load_entry_point('genomepy==0.5.4', 'console_scripts', 'genomepy')() [Mar 19 11:45:24] SERR File "/usr/local/lib/python3.6/site-packages/click/core.py", line 764, in __call__ [Mar 19 11:45:24] SERR return self.main(*args, **kwargs) [Mar 19 11:45:24] SERR File "/usr/local/lib/python3.6/site-packages/click/core.py", line 696, in main [Mar 19 11:45:24] SERR _verify_python3_env() [Mar 19 11:45:24] SERR File "/usr/local/lib/python3.6/site-packages/click/_unicodefun.py", line 124, in _verify_python3_env [Mar 19 11:45:24] SERR ' mitigation steps.' + extra [Mar 19 11:45:24] SERR RuntimeError: Click will abort further execution because Python 3 was configured to use ASCII as encoding for the environment. Consult https://click.palletsprojects.com/en/7.x/python3/ for mitigation steps. [Mar 19 11:45:24] SERR [Mar 19 11:45:24] SERR Additional information: on this system no suitable UTF-8 [Mar 19 11:45:24] SERR locales were discovered. This most likely requires resolving [Mar 19 11:45:24] SERR by reconfiguring the locale system. [Mar 19 11:45:25] ERRO Task processing failed: Unexpected exit code [1] of container [6ad88087a20b step-54cc080860], container preserved
However, in meta.yaml I have the following lines:
meta.yaml
extra: container: # click requires a unicode locale when used with Python 3 # extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly extended-base: true # [py3k]
This used to work, what am I doing wrong? @bgruening any idea?
Looks like this issue bioconda/bioconda-utils#70 @epruesse
Update: I restarted the the CircleCI check and then it runs fine (at least the Linux build does).
I get the following error (for full details see here):
However, in
meta.yaml
I have the following lines:This used to work, what am I doing wrong? @bgruening any idea?