add omssa, MSFragger, MaraCluster

[bernt-matthias]

• [x] OMSSA: Even if its old some some software like OpenMS still uses it. ftp://ftp.ncbi.nlm.nih.gov/pub/lewisg/omssa/2.1.9/
  • [x] recipe https://github.com/bioconda/bioconda-recipes/pull/19181
• [x] LuciPhor2: http://luciphor2.sourceforge.net/
  • [x] provide stable link via depot https://github.com/galaxyproject/cargo-port/pull/164
  • [x] recipe https://github.com/bioconda/bioconda-recipes/pull/19551
• [ ] MaraCluster https://github.com/statisticalbiotechnology/maracluster
  • [ ] https://github.com/bioconda/bioconda-recipes/pull/21472
  • [ ] https://github.com/bioconda/bioconda-recipes/pull/19219
• [x] percolator https://github.com/bioconda/bioconda-recipes/pull/16532
• [x] Inspect. Maybe Available from the authors https://cseweb.ucsd.edu/classes/sp10/cse283/notes/inspect.pdf
  • personal communication with author V. Bafna: "InsPect is no longer maintained as there are many better tools including MS-GF+"
• [x] SpectraST
  • exists as conda package (tpp)
  • source is included in the huge TPP pipeline distribution http://tools.proteomecenter.org/wiki/index.php?title=SpectraST

Probably not possible due to non suitable licence (I still list them here for my reference)

• [ ] Mascot Commercial http://www.matrixscience.com/
• [ ] MSFragger https://github.com/Nesvilab/MSFragger
  • probably not possible https://github.com/Nesvilab/MSFragger/issues/51
  • https://github.com/bioconda/bioconda-recipes/pull/45127
• [ ] Novor http://www.rapidnovor.org/novor

[glormph]

I was planning to have a go at maracluster as well. But my C++-fu and my time for it are both a bit short. At least seeing this can be a good spur, maybe it'll work out this time.