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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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agat caused ClobberError #19127

Closed mictadlo closed 2 years ago

mictadlo commented 4 years ago

Hi @Juke34, I tried conda install agat but I got:

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-try-tiny-0.30-pl526_1, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/Try::Tiny.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/HTML/HeadParser.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Romanian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::Heuristic.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Request::Common.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Amharic.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Chinese_GB.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/data.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Sidama.pm'

What did I miss?

Thank you in advance,

Michal

Juke34 commented 4 years ago

Did you try to install it in a fresh environment?

conda create -n agat conda activate agat conda --install -c bioconda agat

mictadlo commented 4 years ago

Hi, Unfortunately, I still get same problem:

> conda create -n agat
> conda activate agat
(agat)> conda install -c bioconda agat
The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    agat-0.1.0                 |       pl526r35_0         215 KB  bioconda
    binutils_linux-64-2.33.1   |      h9595d00_16          21 KB  conda-forge
    gcc_linux-64-7.3.0         |      h553295d_16          22 KB  conda-forge
    gfortran_impl_linux-64-7.3.0|       hdf63c60_3         9.3 MB  conda-forge
    gfortran_linux-64-7.3.0    |      h553295d_16          21 KB  conda-forge
    giflib-5.2.1               |       h516909a_1          73 KB  conda-forge
    gxx_linux-64-7.3.0         |      h553295d_16          21 KB  conda-forge
    ld_impl_linux-64-2.33.1    |       h53a641e_7         653 KB  conda-forge
    libgfortran-ng-7.3.0       |       hdf63c60_3         1.7 MB  conda-forge
    libtiff-4.1.0              |       hc3755c2_3         568 KB  conda-forge
    libwebp-1.0.2              |       h56121f0_5         938 KB  conda-forge
    python-3.7.6               |       h357f687_2        52.9 MB  conda-forge
    r-base-3.5.1               |    hc461eb7_1012        30.4 MB  conda-forge
    setuptools-44.0.0          |           py37_0         659 KB  conda-forge
    xorg-libxpm-3.5.13         |       h516909a_0          63 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        97.5 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _r-mutex           conda-forge/noarch::_r-mutex-1.0.1-anacondar_1
  agat               bioconda/noarch::agat-0.1.0-pl526r35_0
  binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.33.1-he1b5a44_7
  binutils_linux-64  conda-forge/linux-64::binutils_linux-64-2.33.1-h9595d00_16
  bwidget            conda-forge/linux-64::bwidget-1.9.14-0
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h516909a_2
  ca-certificates    conda-forge/linux-64::ca-certificates-2019.11.28-hecc5488_0
  cairo              conda-forge/linux-64::cairo-1.16.0-hfb77d84_1002
  certifi            conda-forge/linux-64::certifi-2019.11.28-py37_0
  clustalw           bioconda/linux-64::clustalw-2.1-hc9558a2_5
  curl               conda-forge/linux-64::curl-7.65.3-hf8cf82a_0
  expat              conda-forge/linux-64::expat-2.2.5-he1b5a44_1004
  fontconfig         conda-forge/linux-64::fontconfig-2.13.1-h86ecdb6_1001
  freetype           conda-forge/linux-64::freetype-2.10.0-he983fc9_1
  fribidi            conda-forge/linux-64::fribidi-1.0.5-h516909a_1002
  gcc_impl_linux-64  conda-forge/linux-64::gcc_impl_linux-64-7.3.0-habb00fd_2
  gcc_linux-64       conda-forge/linux-64::gcc_linux-64-7.3.0-h553295d_16
  gettext            conda-forge/linux-64::gettext-0.19.8.1-hc5be6a0_1002
  gfortran_impl_lin~ conda-forge/linux-64::gfortran_impl_linux-64-7.3.0-hdf63c60_3
  gfortran_linux-64  conda-forge/linux-64::gfortran_linux-64-7.3.0-h553295d_16
  giflib             conda-forge/linux-64::giflib-5.2.1-h516909a_1
  glib               conda-forge/linux-64::glib-2.58.3-py37h6f030ca_1002
  graphite2          conda-forge/linux-64::graphite2-1.3.13-hf484d3e_1000
  graphviz           conda-forge/linux-64::graphviz-2.42.3-h0511662_0
  gsl                conda-forge/linux-64::gsl-2.5-h294904e_1
  gxx_impl_linux-64  conda-forge/linux-64::gxx_impl_linux-64-7.3.0-hdf63c60_2
  gxx_linux-64       conda-forge/linux-64::gxx_linux-64-7.3.0-h553295d_16
  harfbuzz           conda-forge/linux-64::harfbuzz-2.4.0-h9f30f68_3
  icu                conda-forge/linux-64::icu-64.2-he1b5a44_1
  jpeg               conda-forge/linux-64::jpeg-9c-h14c3975_1001
  krb5               conda-forge/linux-64::krb5-1.16.4-h2fd8d38_0
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
  libblas            conda-forge/linux-64::libblas-3.8.0-14_openblas
  libcblas           conda-forge/linux-64::libcblas-3.8.0-14_openblas
  libcurl            conda-forge/linux-64::libcurl-7.65.3-hda55be3_0
  libdb              bioconda/linux-64::libdb-6.1.26-0
  libedit            conda-forge/linux-64::libedit-3.1.20170329-hf8c457e_1001
  libffi             conda-forge/linux-64::libffi-3.2.1-he1b5a44_1006
  libgcc             conda-forge/linux-64::libgcc-7.2.0-h69d50b8_2
  libgcc-ng          conda-forge/linux-64::libgcc-ng-9.2.0-h24d8f2e_1
  libgd              conda-forge/linux-64::libgd-2.2.5-h307a58e_1007
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-7.3.0-hdf63c60_3
  libgomp            conda-forge/linux-64::libgomp-9.2.0-h24d8f2e_1
  libiconv           conda-forge/linux-64::libiconv-1.15-h516909a_1005
  libopenblas        conda-forge/linux-64::libopenblas-0.3.7-h5ec1e0e_6
  libpng             conda-forge/linux-64::libpng-1.6.37-hed695b0_0
  libssh2            conda-forge/linux-64::libssh2-1.8.2-h22169c7_2
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-9.2.0-hdf63c60_1
  libtiff            conda-forge/linux-64::libtiff-4.1.0-hc3755c2_3
  libtool            conda-forge/linux-64::libtool-2.4.6-h14c3975_1002
  libuuid            conda-forge/linux-64::libuuid-2.32.1-h14c3975_1000
  libwebp            conda-forge/linux-64::libwebp-1.0.2-h56121f0_5
  libxcb             conda-forge/linux-64::libxcb-1.13-h14c3975_1002
  libxml2            conda-forge/linux-64::libxml2-2.9.10-hee79883_0
  libxslt            conda-forge/linux-64::libxslt-1.1.33-h31b3aaa_0
  lz4-c              conda-forge/linux-64::lz4-c-1.8.3-he1b5a44_1001
  make               conda-forge/linux-64::make-4.2.1-h14c3975_2004
  ncurses            conda-forge/linux-64::ncurses-6.1-hf484d3e_1002
  openmp_impl        conda-forge/linux-64::openmp_impl-4.5-0_gnu
  openssl            conda-forge/linux-64::openssl-1.1.1d-h516909a_0
  paml               bioconda/linux-64::paml-4.9-h516909a_5
  pango              conda-forge/linux-64::pango-1.42.4-ha030887_1
  pcre               conda-forge/linux-64::pcre-8.43-he1b5a44_0
  perl               conda-forge/linux-64::perl-5.26.2-h516909a_1006
  perl-aceperl       bioconda/linux-64::perl-aceperl-1.92-pl526_2
  perl-algorithm-di~ bioconda/linux-64::perl-algorithm-diff-1.1903-pl526_2
  perl-algorithm-mu~ bioconda/linux-64::perl-algorithm-munkres-0.08-pl526_1
  perl-apache-test   bioconda/linux-64::perl-apache-test-1.40-pl526_1
  perl-app-cpanminus bioconda/linux-64::perl-app-cpanminus-1.7044-pl526_1
  perl-appconfig     bioconda/linux-64::perl-appconfig-1.71-pl526_1
  perl-array-compare bioconda/linux-64::perl-array-compare-3.0.1-pl526_1
  perl-autoloader    bioconda/linux-64::perl-autoloader-5.74-pl526_2
  perl-base          bioconda/linux-64::perl-base-2.23-pl526_1
  perl-bio-asn1-ent~ bioconda/noarch::perl-bio-asn1-entrezgene-1.73-pl526_1
  perl-bio-coordina~ bioconda/noarch::perl-bio-coordinate-1.007001-pl526_1
  perl-bio-featureio bioconda/noarch::perl-bio-featureio-1.6.905-pl526_2
  perl-bio-phylo     bioconda/noarch::perl-bio-phylo-0.58-pl526_2
  perl-bio-samtools  bioconda/linux-64::perl-bio-samtools-1.43-pl526h1341992_1
  perl-bio-tools-ph~ bioconda/noarch::perl-bio-tools-phylo-paml-1.7.3-pl526_1
  perl-bio-tools-ru~ bioconda/noarch::perl-bio-tools-run-alignment-clustalw-1.7.4-pl526_1
  perl-bio-tools-ru~ bioconda/noarch::perl-bio-tools-run-alignment-tcoffee-1.7.4-pl526_2
  perl-bioperl       bioconda/noarch::perl-bioperl-1.7.2-pl526_11
  perl-bioperl-core  bioconda/noarch::perl-bioperl-core-1.007002-pl526_2
  perl-bioperl-run   bioconda/noarch::perl-bioperl-run-1.007002-pl526_4
  perl-business-isbn bioconda/linux-64::perl-business-isbn-3.004-pl526_0
  perl-business-isb~ bioconda/linux-64::perl-business-isbn-data-20140910.003-pl526_0
  perl-cache-cache   bioconda/linux-64::perl-cache-cache-1.08-pl526_0
  perl-capture-tiny  bioconda/linux-64::perl-capture-tiny-0.48-pl526_0
  perl-carp          bioconda/linux-64::perl-carp-1.38-pl526_3
  perl-cgi           bioconda/linux-64::perl-cgi-4.44-pl526h14c3975_1
  perl-class-data-i~ bioconda/linux-64::perl-class-data-inheritable-0.08-pl526_1
  perl-class-inspec~ bioconda/linux-64::perl-class-inspector-1.34-pl526_0
  perl-class-load    bioconda/linux-64::perl-class-load-0.25-pl526_0
  perl-class-load-xs bioconda/linux-64::perl-class-load-xs-0.10-pl526h6bb024c_2
  perl-class-method~ bioconda/linux-64::perl-class-method-modifiers-2.12-pl526_0
  perl-clone         bioconda/linux-64::perl-clone-0.42-pl526h516909a_0
  perl-common-sense  bioconda/linux-64::perl-common-sense-3.74-pl526_2
  perl-compress-raw~ bioconda/linux-64::perl-compress-raw-zlib-2.087-pl526hc9558a2_0
  perl-constant      bioconda/linux-64::perl-constant-1.33-pl526_1
  perl-convert-bina~ bioconda/linux-64::perl-convert-binary-c-0.78-pl526h6bb024c_3
  perl-convert-binh~ bioconda/linux-64::perl-convert-binhex-1.125-pl526_1
  perl-crypt-rc4     bioconda/linux-64::perl-crypt-rc4-2.02-pl526_1
  perl-data-dumper   bioconda/linux-64::perl-data-dumper-2.173-pl526_0
  perl-data-optlist  bioconda/linux-64::perl-data-optlist-0.110-pl526_2
  perl-data-stag     bioconda/linux-64::perl-data-stag-0.14-pl526_1
  perl-date-format   bioconda/linux-64::perl-date-format-2.30-pl526_2
  perl-db-file       bioconda/linux-64::perl-db-file-1.852-pl526h14c3975_0
  perl-dbd-sqlite    bioconda/linux-64::perl-dbd-sqlite-1.64-pl526h516909a_0
  perl-dbi           bioconda/linux-64::perl-dbi-1.642-pl526_0
  perl-devel-global~ bioconda/linux-64::perl-devel-globaldestruction-0.14-pl526_0
  perl-devel-overlo~ bioconda/linux-64::perl-devel-overloadinfo-0.005-pl526_0
  perl-devel-stackt~ bioconda/noarch::perl-devel-stacktrace-2.04-pl526_0
  perl-digest-hmac   bioconda/linux-64::perl-digest-hmac-1.03-pl526_3
  perl-digest-md5    bioconda/linux-64::perl-digest-md5-2.55-pl526_0
  perl-digest-perl-~ bioconda/linux-64::perl-digest-perl-md5-1.9-pl526_1
  perl-digest-sha1   bioconda/linux-64::perl-digest-sha1-2.13-pl526h6bb024c_1
  perl-dist-checkco~ bioconda/linux-64::perl-dist-checkconflicts-0.11-pl526_2
  perl-dynaloader    bioconda/linux-64::perl-dynaloader-1.25-pl526_1
  perl-email-date-f~ bioconda/linux-64::perl-email-date-format-1.005-pl526_2
  perl-encode        bioconda/linux-64::perl-encode-2.88-pl526_1
  perl-encode-locale bioconda/linux-64::perl-encode-locale-1.05-pl526_6
  perl-error         bioconda/linux-64::perl-error-0.17027-pl526_1
  perl-eval-closure  bioconda/linux-64::perl-eval-closure-0.14-pl526h6bb024c_4
  perl-exception-cl~ bioconda/linux-64::perl-exception-class-1.44-pl526_0
  perl-exporter      bioconda/linux-64::perl-exporter-5.72-pl526_1
  perl-exporter-tiny bioconda/linux-64::perl-exporter-tiny-1.002001-pl526_0
  perl-extutils-mak~ bioconda/linux-64::perl-extutils-makemaker-7.36-pl526_1
  perl-file-listing  bioconda/linux-64::perl-file-listing-6.04-pl526_1
  perl-file-path     bioconda/linux-64::perl-file-path-2.16-pl526_0
  perl-file-share    bioconda/linux-64::perl-file-share-0.25-pl526_2
  perl-file-sharedir bioconda/linux-64::perl-file-sharedir-1.116-pl526_1
  perl-file-sharedi~ bioconda/linux-64::perl-file-sharedir-install-0.13-pl526_0
  perl-file-slurp-t~ bioconda/linux-64::perl-file-slurp-tiny-0.004-pl526_1
  perl-file-sort     bioconda/linux-64::perl-file-sort-1.01-pl526_2
  perl-file-temp     bioconda/linux-64::perl-file-temp-0.2304-pl526_2
  perl-file-which    bioconda/linux-64::perl-file-which-1.23-pl526_0
  perl-font-afm      bioconda/linux-64::perl-font-afm-1.20-pl526_2
  perl-font-ttf      bioconda/linux-64::perl-font-ttf-1.06-pl526_0
  perl-gd            bioconda/linux-64::perl-gd-2.71-pl526he860b03_0
  perl-getopt-long   bioconda/linux-64::perl-getopt-long-2.50-pl526_1
  perl-graph         bioconda/linux-64::perl-graph-0.9704-pl526_1
  perl-graphviz      bioconda/linux-64::perl-graphviz-2.24-pl526h734ff71_0
  perl-html-element~ bioconda/linux-64::perl-html-element-extended-1.18-pl526_1
  perl-html-entitie~ bioconda/linux-64::perl-html-entities-numbered-0.04-pl526_1
  perl-html-formatt~ bioconda/linux-64::perl-html-formatter-2.16-pl526_0
  perl-html-parser   bioconda/linux-64::perl-html-parser-3.72-pl526h6bb024c_5
  perl-html-tableex~ bioconda/linux-64::perl-html-tableextract-2.13-pl526_2
  perl-html-tagset   bioconda/linux-64::perl-html-tagset-3.20-pl526_3
  perl-html-tidy     bioconda/linux-64::perl-html-tidy-1.60-pl526_0
  perl-html-tree     bioconda/linux-64::perl-html-tree-5.07-pl526_1
  perl-html-treebui~ bioconda/linux-64::perl-html-treebuilder-xpath-0.14-pl526_1
  perl-http-cookies  bioconda/linux-64::perl-http-cookies-6.04-pl526_0
  perl-http-daemon   bioconda/linux-64::perl-http-daemon-6.01-pl526_1
  perl-http-date     bioconda/linux-64::perl-http-date-6.02-pl526_3
  perl-http-message  bioconda/linux-64::perl-http-message-6.18-pl526_0
  perl-http-negotia~ bioconda/linux-64::perl-http-negotiate-6.01-pl526_3
  perl-image-info    bioconda/linux-64::perl-image-info-1.38-pl526_1
  perl-image-size    bioconda/linux-64::perl-image-size-3.300-pl526_2
  perl-io-html       bioconda/linux-64::perl-io-html-1.001-pl526_2
  perl-io-sessionda~ bioconda/linux-64::perl-io-sessiondata-1.03-pl526_1
  perl-io-socket-ssl bioconda/linux-64::perl-io-socket-ssl-2.066-pl526_0
  perl-io-string     bioconda/linux-64::perl-io-string-1.08-pl526_3
  perl-io-stringy    bioconda/linux-64::perl-io-stringy-2.111-pl526_1
  perl-io-tty        bioconda/linux-64::perl-io-tty-1.12-pl526_1
  perl-ipc-run       bioconda/linux-64::perl-ipc-run-20180523.0-pl526_0
  perl-ipc-sharelite bioconda/linux-64::perl-ipc-sharelite-0.17-pl526h6bb024c_1
  perl-jcode         bioconda/linux-64::perl-jcode-2.07-pl526_2
  perl-json          bioconda/linux-64::perl-json-4.02-pl526_0
  perl-json-xs       bioconda/linux-64::perl-json-xs-2.34-pl526h6bb024c_3
  perl-lib           bioconda/linux-64::perl-lib-0.63-pl526_1
  perl-libwww-perl   bioconda/noarch::perl-libwww-perl-6.39-pl526_0
  perl-libxml-perl   bioconda/linux-64::perl-libxml-perl-0.08-pl526_2
  perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-0.428-pl526_1
  perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.428-pl526_0
  perl-lwp-mediatyp~ bioconda/linux-64::perl-lwp-mediatypes-6.04-pl526_0
  perl-lwp-protocol~ bioconda/linux-64::perl-lwp-protocol-https-6.07-pl526_4
  perl-lwp-simple    bioconda/linux-64::perl-lwp-simple-6.15-pl526h470a237_4
  perl-mailtools     bioconda/noarch::perl-mailtools-2.21-pl526_0
  perl-math-cdf      bioconda/linux-64::perl-math-cdf-0.1-pl526h14c3975_5
  perl-math-derivat~ bioconda/linux-64::perl-math-derivative-1.01-pl526_0
  perl-math-random   bioconda/linux-64::perl-math-random-0.72-pl526h14c3975_2
  perl-math-spline   bioconda/linux-64::perl-math-spline-0.02-pl526_2
  perl-mime-base64   bioconda/linux-64::perl-mime-base64-3.15-pl526_1
  perl-mime-lite     bioconda/linux-64::perl-mime-lite-3.030-pl526_1
  perl-mime-tools    bioconda/linux-64::perl-mime-tools-5.508-pl526_1
  perl-mime-types    bioconda/linux-64::perl-mime-types-2.17-pl526_0
  perl-mldbm         bioconda/linux-64::perl-mldbm-2.05-pl526_1
  perl-module-imple~ bioconda/linux-64::perl-module-implementation-0.09-pl526_2
  perl-module-runti~ bioconda/linux-64::perl-module-runtime-0.016-pl526_1
  perl-module-runti~ bioconda/linux-64::perl-module-runtime-conflicts-0.003-pl526_0
  perl-moo           bioconda/linux-64::perl-moo-2.003004-pl526_0
  perl-moose         bioconda/linux-64::perl-moose-2.2011-pl526hf484d3e_1
  perl-mozilla-ca    bioconda/linux-64::perl-mozilla-ca-20180117-pl526_1
  perl-mro-compat    bioconda/linux-64::perl-mro-compat-0.13-pl526_0
  perl-net-http      bioconda/noarch::perl-net-http-6.19-pl526_0
  perl-net-ssleay    bioconda/linux-64::perl-net-ssleay-1.88-pl526h90d6eec_0
  perl-ntlm          bioconda/linux-64::perl-ntlm-1.09-pl526_4
  perl-ole-storage_~ bioconda/linux-64::perl-ole-storage_lite-0.19-pl526_3
  perl-package-depr~ bioconda/linux-64::perl-package-deprecationmanager-0.17-pl526_0
  perl-package-stash bioconda/linux-64::perl-package-stash-0.38-pl526hf484d3e_1
  perl-package-stas~ bioconda/linux-64::perl-package-stash-xs-0.28-pl526hf484d3e_1
  perl-params-util   bioconda/linux-64::perl-params-util-1.07-pl526h6bb024c_4
  perl-parent        bioconda/linux-64::perl-parent-0.236-pl526_1
  perl-parse-recdes~ bioconda/linux-64::perl-parse-recdescent-1.967015-pl526_0
  perl-pathtools     bioconda/linux-64::perl-pathtools-3.75-pl526h14c3975_1
  perl-pdf-api2      bioconda/noarch::perl-pdf-api2-2.035-pl526_0
  perl-pod-escapes   bioconda/linux-64::perl-pod-escapes-1.07-pl526_1
  perl-pod-usage     bioconda/linux-64::perl-pod-usage-1.69-pl526_1
  perl-postscript    bioconda/linux-64::perl-postscript-0.06-pl526_2
  perl-regexp-common bioconda/linux-64::perl-regexp-common-2017060201-pl526_0
  perl-role-tiny     bioconda/noarch::perl-role-tiny-2.000008-pl526_0
  perl-scalar-list-~ bioconda/linux-64::perl-scalar-list-utils-1.52-pl526h516909a_0
  perl-set-scalar    bioconda/linux-64::perl-set-scalar-1.29-pl526_2
  perl-soap-lite     bioconda/linux-64::perl-soap-lite-1.19-pl526_1
  perl-socket        bioconda/linux-64::perl-socket-2.027-pl526_1
  perl-sort-natural~ bioconda/linux-64::perl-sort-naturally-1.03-pl526_2
  perl-spreadsheet-~ bioconda/linux-64::perl-spreadsheet-parseexcel-0.65-pl526_2
  perl-spreadsheet-~ bioconda/linux-64::perl-spreadsheet-writeexcel-2.40-pl526_2
  perl-statistics-d~ bioconda/linux-64::perl-statistics-descriptive-3.0702-pl526_0
  perl-statistics-r  bioconda/linux-64::perl-statistics-r-0.34-pl526r351_3
  perl-storable      bioconda/linux-64::perl-storable-3.15-pl526h14c3975_0
  perl-sub-exporter  bioconda/linux-64::perl-sub-exporter-0.987-pl526_2
  perl-sub-exporter~ bioconda/linux-64::perl-sub-exporter-progressive-0.001013-pl526_0
  perl-sub-identify  bioconda/linux-64::perl-sub-identify-0.14-pl526h14c3975_0
  perl-sub-install   bioconda/linux-64::perl-sub-install-0.928-pl526_2
  perl-sub-name      bioconda/linux-64::perl-sub-name-0.21-pl526_1
  perl-sub-quote     bioconda/linux-64::perl-sub-quote-2.006003-pl526_1
  perl-sub-uplevel   bioconda/linux-64::perl-sub-uplevel-0.2800-pl526h14c3975_2
  perl-svg           bioconda/linux-64::perl-svg-2.84-pl526_0
  perl-svg-graph     bioconda/linux-64::perl-svg-graph-0.02-pl526_3
  perl-task-weaken   bioconda/linux-64::perl-task-weaken-1.06-pl526_0
  perl-template-too~ bioconda/linux-64::perl-template-toolkit-2.26-pl526_1
  perl-test          bioconda/linux-64::perl-test-1.26-pl526_1
  perl-test-deep     bioconda/linux-64::perl-test-deep-1.128-pl526_1
  perl-test-differe~ bioconda/noarch::perl-test-differences-0.67-pl526_0
  perl-test-excepti~ bioconda/linux-64::perl-test-exception-0.43-pl526_2
  perl-test-harness  bioconda/linux-64::perl-test-harness-3.42-pl526_0
  perl-test-leaktra~ bioconda/linux-64::perl-test-leaktrace-0.16-pl526h14c3975_2
  perl-test-most     bioconda/linux-64::perl-test-most-0.35-pl526_0
  perl-test-require~ bioconda/linux-64::perl-test-requiresinternet-0.05-pl526_0
  perl-test-warn     bioconda/linux-64::perl-test-warn-0.36-pl526_1
  perl-text-balanced bioconda/linux-64::perl-text-balanced-2.03-pl526_3
  perl-text-diff     bioconda/linux-64::perl-text-diff-1.45-pl526_0
  perl-text-wrap     bioconda/linux-64::perl-text-wrap-2013.0523-pl526_1
  perl-tie-ixhash    bioconda/linux-64::perl-tie-ixhash-1.23-pl526_2
  perl-time-hires    bioconda/linux-64::perl-time-hires-1.9760-pl526h14c3975_1
  perl-time-local    bioconda/linux-64::perl-time-local-1.28-pl526_1
  perl-timedate      bioconda/linux-64::perl-timedate-2.30-pl526_1
  perl-tree-dag_node bioconda/linux-64::perl-tree-dag_node-1.31-pl526_0
  perl-try-tiny      bioconda/linux-64::perl-try-tiny-0.30-pl526_1
  perl-type-tiny     bioconda/linux-64::perl-type-tiny-1.004004-pl526_0
  perl-types-serial~ bioconda/linux-64::perl-types-serialiser-1.0-pl526_2
  perl-unicode-map   bioconda/linux-64::perl-unicode-map-0.112-pl526h6bb024c_3
  perl-uri           bioconda/linux-64::perl-uri-1.76-pl526_0
  perl-www-robotrul~ bioconda/linux-64::perl-www-robotrules-6.02-pl526_3
  perl-xml-dom       bioconda/linux-64::perl-xml-dom-1.46-pl526_0
  perl-xml-dom-xpath bioconda/linux-64::perl-xml-dom-xpath-0.14-pl526_1
  perl-xml-filter-b~ bioconda/linux-64::perl-xml-filter-buffertext-1.01-pl526_2
  perl-xml-libxml    bioconda/linux-64::perl-xml-libxml-2.0132-pl526h7ec2d77_1
  perl-xml-libxslt   bioconda/linux-64::perl-xml-libxslt-1.94-pl526_1
  perl-xml-namespac~ bioconda/linux-64::perl-xml-namespacesupport-1.12-pl526_0
  perl-xml-parser    bioconda/linux-64::perl-xml-parser-2.44-pl526h4e0c4b3_7
  perl-xml-regexp    bioconda/linux-64::perl-xml-regexp-0.04-pl526_2
  perl-xml-sax       bioconda/noarch::perl-xml-sax-1.02-pl526_0
  perl-xml-sax-base  bioconda/linux-64::perl-xml-sax-base-1.09-pl526_0
  perl-xml-sax-expat bioconda/linux-64::perl-xml-sax-expat-0.51-pl526_3
  perl-xml-sax-writ~ bioconda/linux-64::perl-xml-sax-writer-0.57-pl526_0
  perl-xml-simple    bioconda/linux-64::perl-xml-simple-2.25-pl526_1
  perl-xml-twig      bioconda/linux-64::perl-xml-twig-3.52-pl526_2
  perl-xml-writer    bioconda/linux-64::perl-xml-writer-0.625-pl526_2
  perl-xml-xpath     bioconda/linux-64::perl-xml-xpath-1.44-pl526_0
  perl-xml-xpatheng~ bioconda/linux-64::perl-xml-xpathengine-0.14-pl526_2
  perl-xsloader      bioconda/linux-64::perl-xsloader-0.24-pl526_0
  perl-yaml          bioconda/noarch::perl-yaml-1.29-pl526_0
  pip                conda-forge/linux-64::pip-19.3.1-py37_0
  pixman             conda-forge/linux-64::pixman-0.38.0-h516909a_1003
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h14c3975_1001
  python             conda-forge/linux-64::python-3.7.6-h357f687_2
  r-base             conda-forge/linux-64::r-base-3.5.1-hc461eb7_1012
  readline           conda-forge/linux-64::readline-8.0-hf8c457e_0
  setuptools         conda-forge/linux-64::setuptools-44.0.0-py37_0
  sqlite             conda-forge/linux-64::sqlite-3.30.1-hcee41ef_0
  t_coffee           bioconda/linux-64::t_coffee-11.0.8-py37hea885bf_8
  tidyp              bioconda/linux-64::tidyp-1.04-1
  tk                 conda-forge/linux-64::tk-8.6.10-hed695b0_0
  tktable            conda-forge/linux-64::tktable-2.10-h555a92e_3
  wheel              conda-forge/linux-64::wheel-0.33.6-py37_0
  xorg-kbproto       conda-forge/linux-64::xorg-kbproto-1.0.7-h14c3975_1002
  xorg-libice        conda-forge/linux-64::xorg-libice-1.0.10-h516909a_0
  xorg-libsm         conda-forge/linux-64::xorg-libsm-1.2.3-h84519dc_1000
  xorg-libx11        conda-forge/linux-64::xorg-libx11-1.6.9-h516909a_0
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.9-h14c3975_0
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h516909a_0
  xorg-libxext       conda-forge/linux-64::xorg-libxext-1.3.4-h516909a_0
  xorg-libxpm        conda-forge/linux-64::xorg-libxpm-3.5.13-h516909a_0
  xorg-libxrender    conda-forge/linux-64::xorg-libxrender-0.9.10-h516909a_1002
  xorg-libxt         conda-forge/linux-64::xorg-libxt-1.1.5-h516909a_1003
  xorg-renderproto   conda-forge/linux-64::xorg-renderproto-0.11.1-h14c3975_1002
  xorg-xextproto     conda-forge/linux-64::xorg-xextproto-7.3.0-h14c3975_1002
  xorg-xproto        conda-forge/linux-64::xorg-xproto-7.0.31-h14c3975_1007
  xz                 conda-forge/linux-64::xz-5.2.4-h14c3975_1001
  zlib               conda-forge/linux-64::zlib-1.2.11-h516909a_1006
  zstd               conda-forge/linux-64::zstd-1.4.4-h3b9ef0a_1

Proceed ([y]/n)? y

Downloading and Extracting Packages
agat-0.1.0           | 215 KB    | ################################################################################################################################################################################################ | 100% 
libwebp-1.0.2        | 938 KB    | ################################################################################################################################################################################################ | 100% 
gfortran_linux-64-7. | 21 KB     | ################################################################################################################################################################################################ | 100% 
binutils_linux-64-2. | 21 KB     | ################################################################################################################################################################################################ | 100% 
python-3.7.6         | 52.9 MB   | ################################################################################################################################################################################################ | 100% 
giflib-5.2.1         | 73 KB     | ################################################################################################################################################################################################ | 100% 
gfortran_impl_linux- | 9.3 MB    | ################################################################################################################################################################################################ | 100% 
gcc_linux-64-7.3.0   | 22 KB     | ################################################################################################################################################################################################ | 100% 
ld_impl_linux-64-2.3 | 653 KB    | ################################################################################################################################################################################################ | 100% 
xorg-libxpm-3.5.13   | 63 KB     | ################################################################################################################################################################################################ | 100% 
setuptools-44.0.0    | 659 KB    | ################################################################################################################################################################################################ | 100% 
gxx_linux-64-7.3.0   | 21 KB     | ################################################################################################################################################################################################ | 100% 
r-base-3.5.1         | 30.4 MB   | ################################################################################################################################################################################################ | 100% 
libtiff-4.1.0        | 568 KB    | ################################################################################################################################################################################################ | 100% 
libgfortran-ng-7.3.0 | 1.7 MB    | ################################################################################################################################################################################################ | 100% 
Preparing transaction: done
Verifying transaction: failed

CondaMultiError: CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'lib/cairo/libcairo-trace.a'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'lib/libcairo-gobject.a'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'lib/libcairo-script-interpreter.a'
specified in the package manifest cannot be found.

What did I miss?

Thank you in advance,

Juke34 commented 4 years ago

I don’t understand, it sounds conda try to install much more things than needed for AGAT. Did you update conda? It sounds you have python2 and it install python3 first. You could try (remove the agat env first):

conda create -n agat python=3 conda activate agat conda --install -c bioconda agat

mictadlo commented 4 years ago

What do you mean with update conda? I tried your commands and still the same problems:

(base) lorencm@lyra04:~> conda env remove --name agat

Remove all packages in environment /work/waterhouse_team/miniconda2/envs/agat:

(base) lorencm@lyra04:~> rm -r /work/waterhouse_team/miniconda2/envs/agat
rm: cannot remove '/work/waterhouse_team/miniconda2/envs/agat': No such file or directory
(base) lorencm@lyra04:~> conda create -n agat python=3
Collecting package metadata (repodata.json): done
Solving environment: done

==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.1

Please update conda by running

    $ conda update -n base -c defaults conda

## Package Plan ##

  environment location: /work/waterhouse_team/miniconda2/envs/agat

  added / updated specs:
    - python=3

The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _openmp_mutex-4.5          |            0_gnu         435 KB  conda-forge
    certifi-2019.11.28         |           py38_0         148 KB  conda-forge
    libgcc-ng-9.2.0            |       h24d8f2e_2         8.2 MB  conda-forge
    libgomp-9.2.0              |       h24d8f2e_2         816 KB  conda-forge
    libstdcxx-ng-9.2.0         |       hdf63c60_2         4.5 MB  conda-forge
    pip-19.3.1                 |           py38_0         1.9 MB  conda-forge
    python-3.8.1               |       h357f687_1        58.1 MB  conda-forge
    setuptools-44.0.0          |           py38_0         642 KB  conda-forge
    wheel-0.33.6               |           py38_0          35 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        74.7 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-0_gnu
  ca-certificates    conda-forge/linux-64::ca-certificates-2019.11.28-hecc5488_0
  certifi            conda-forge/linux-64::certifi-2019.11.28-py38_0
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
  libffi             conda-forge/linux-64::libffi-3.2.1-he1b5a44_1006
  libgcc-ng          conda-forge/linux-64::libgcc-ng-9.2.0-h24d8f2e_2
  libgomp            conda-forge/linux-64::libgomp-9.2.0-h24d8f2e_2
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-9.2.0-hdf63c60_2
  ncurses            conda-forge/linux-64::ncurses-6.1-hf484d3e_1002
  openssl            conda-forge/linux-64::openssl-1.1.1d-h516909a_0
  pip                conda-forge/linux-64::pip-19.3.1-py38_0
  python             conda-forge/linux-64::python-3.8.1-h357f687_1
  readline           conda-forge/linux-64::readline-8.0-hf8c457e_0
  setuptools         conda-forge/linux-64::setuptools-44.0.0-py38_0
  sqlite             conda-forge/linux-64::sqlite-3.30.1-hcee41ef_0
  tk                 conda-forge/linux-64::tk-8.6.10-hed695b0_0
  wheel              conda-forge/linux-64::wheel-0.33.6-py38_0
  xz                 conda-forge/linux-64::xz-5.2.4-h14c3975_1001
  zlib               conda-forge/linux-64::zlib-1.2.11-h516909a_1006

Proceed ([y]/n)? y

Downloading and Extracting Packages
pip-19.3.1           | 1.9 MB    | ################################################################################################################################################################# | 100% 
_openmp_mutex-4.5    | 435 KB    | ################################################################################################################################################################# | 100% 
python-3.8.1         | 58.1 MB   | ################################################################################################################################################################# | 100% 
setuptools-44.0.0    | 642 KB    | ################################################################################################################################################################# | 100% 
libstdcxx-ng-9.2.0   | 4.5 MB    | ################################################################################################################################################################# | 100% 
libgomp-9.2.0        | 816 KB    | ################################################################################################################################################################# | 100% 
certifi-2019.11.28   | 148 KB    | ################################################################################################################################################################# | 100% 
libgcc-ng-9.2.0      | 8.2 MB    | ################################################################################################################################################################# | 100% 
wheel-0.33.6         | 35 KB     | ################################################################################################################################################################# | 100% 
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
#     $ conda activate agat
#
# To deactivate an active environment, use
#
#     $ conda deactivate

(base) lorencm@lyra04:~> conda activate agat
(agat) lorencm@lyra04:~> conda --install -c bioconda agat

CommandNotFoundError: No command 'conda bioconda'.

(agat) lorencm@lyra04:~> conda install -c bioconda agat
Collecting package metadata (repodata.json): done
Solving environment: done

==> WARNING: A newer version of conda exists. <==
  current version: 4.7.12
  latest version: 4.8.1

Please update conda by running

    $ conda update -n base -c defaults conda

## Package Plan ##

  environment location: /work/waterhouse_team/miniconda2/envs/agat

  added / updated specs:
    - agat

The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    gcc_impl_linux-64-7.3.0    |       hd420e75_4        70.6 MB  conda-forge
    gfortran_impl_linux-64-7.3.0|       hdf63c60_4         9.4 MB  conda-forge
    gxx_impl_linux-64-7.3.0    |       hdf63c60_4        19.1 MB  conda-forge
    libgfortran-ng-7.3.0       |       hdf63c60_4         1.7 MB  conda-forge
    ------------------------------------------------------------
                                           Total:       100.8 MB

The following NEW packages will be INSTALLED:

  _r-mutex           conda-forge/noarch::_r-mutex-1.0.1-anacondar_1
  agat               bioconda/noarch::agat-0.1.0-pl526r35_0
  binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.33.1-he1b5a44_7
  binutils_linux-64  conda-forge/linux-64::binutils_linux-64-2.33.1-h9595d00_16
  bwidget            conda-forge/linux-64::bwidget-1.9.14-0
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h516909a_2
  cairo              conda-forge/linux-64::cairo-1.16.0-hfb77d84_1002
  clustalw           bioconda/linux-64::clustalw-2.1-hc9558a2_5
  curl               conda-forge/linux-64::curl-7.65.3-hf8cf82a_0
  expat              conda-forge/linux-64::expat-2.2.5-he1b5a44_1004
  fontconfig         conda-forge/linux-64::fontconfig-2.13.1-h86ecdb6_1001
  freetype           conda-forge/linux-64::freetype-2.10.0-he983fc9_1
  fribidi            conda-forge/linux-64::fribidi-1.0.5-h516909a_1002
  gcc_impl_linux-64  conda-forge/linux-64::gcc_impl_linux-64-7.3.0-hd420e75_4
  gcc_linux-64       conda-forge/linux-64::gcc_linux-64-7.3.0-h553295d_16
  gettext            conda-forge/linux-64::gettext-0.19.8.1-hc5be6a0_1002
  gfortran_impl_lin~ conda-forge/linux-64::gfortran_impl_linux-64-7.3.0-hdf63c60_4
  gfortran_linux-64  conda-forge/linux-64::gfortran_linux-64-7.3.0-h553295d_16
  giflib             conda-forge/linux-64::giflib-5.2.1-h516909a_1
  glib               conda-forge/linux-64::glib-2.58.3-py37h6f030ca_1002
  graphite2          conda-forge/linux-64::graphite2-1.3.13-hf484d3e_1000
  graphviz           conda-forge/linux-64::graphviz-2.42.3-h0511662_0
  gsl                conda-forge/linux-64::gsl-2.5-h294904e_1
  gxx_impl_linux-64  conda-forge/linux-64::gxx_impl_linux-64-7.3.0-hdf63c60_4
  gxx_linux-64       conda-forge/linux-64::gxx_linux-64-7.3.0-h553295d_16
  harfbuzz           conda-forge/linux-64::harfbuzz-2.4.0-h9f30f68_3
  icu                conda-forge/linux-64::icu-64.2-he1b5a44_1
  jpeg               conda-forge/linux-64::jpeg-9c-h14c3975_1001
  krb5               conda-forge/linux-64::krb5-1.16.4-h2fd8d38_0
  libblas            conda-forge/linux-64::libblas-3.8.0-14_openblas
  libcblas           conda-forge/linux-64::libcblas-3.8.0-14_openblas
  libcurl            conda-forge/linux-64::libcurl-7.65.3-hda55be3_0
  libdb              bioconda/linux-64::libdb-6.1.26-0
  libedit            conda-forge/linux-64::libedit-3.1.20170329-hf8c457e_1001
  libgcc             conda-forge/linux-64::libgcc-7.2.0-h69d50b8_2
  libgd              conda-forge/linux-64::libgd-2.2.5-h307a58e_1007
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-7.3.0-hdf63c60_4
  libiconv           conda-forge/linux-64::libiconv-1.15-h516909a_1005
  libopenblas        conda-forge/linux-64::libopenblas-0.3.7-h5ec1e0e_6
  libpng             conda-forge/linux-64::libpng-1.6.37-hed695b0_0
  libssh2            conda-forge/linux-64::libssh2-1.8.2-h22169c7_2
  libtiff            conda-forge/linux-64::libtiff-4.1.0-hc3755c2_3
  libtool            conda-forge/linux-64::libtool-2.4.6-h14c3975_1002
  libuuid            conda-forge/linux-64::libuuid-2.32.1-h14c3975_1000
  libwebp            conda-forge/linux-64::libwebp-1.0.2-h56121f0_5
  libxcb             conda-forge/linux-64::libxcb-1.13-h14c3975_1002
  libxml2            conda-forge/linux-64::libxml2-2.9.10-hee79883_0
  libxslt            conda-forge/linux-64::libxslt-1.1.33-h31b3aaa_0
  lz4-c              conda-forge/linux-64::lz4-c-1.8.3-he1b5a44_1001
  make               conda-forge/linux-64::make-4.2.1-h14c3975_2004
  paml               bioconda/linux-64::paml-4.9-h516909a_5
  pango              conda-forge/linux-64::pango-1.42.4-ha030887_1
  pcre               conda-forge/linux-64::pcre-8.43-he1b5a44_0
  perl               conda-forge/linux-64::perl-5.26.2-h516909a_1006
  perl-aceperl       bioconda/linux-64::perl-aceperl-1.92-pl526_2
  perl-algorithm-di~ bioconda/linux-64::perl-algorithm-diff-1.1903-pl526_2
  perl-algorithm-mu~ bioconda/linux-64::perl-algorithm-munkres-0.08-pl526_1
  perl-apache-test   bioconda/linux-64::perl-apache-test-1.40-pl526_1
  perl-app-cpanminus bioconda/linux-64::perl-app-cpanminus-1.7044-pl526_1
  perl-appconfig     bioconda/linux-64::perl-appconfig-1.71-pl526_1
  perl-array-compare bioconda/linux-64::perl-array-compare-3.0.1-pl526_1
  perl-autoloader    bioconda/linux-64::perl-autoloader-5.74-pl526_2
  perl-base          bioconda/linux-64::perl-base-2.23-pl526_1
  perl-bio-asn1-ent~ bioconda/noarch::perl-bio-asn1-entrezgene-1.73-pl526_1
  perl-bio-coordina~ bioconda/noarch::perl-bio-coordinate-1.007001-pl526_1
  perl-bio-featureio bioconda/noarch::perl-bio-featureio-1.6.905-pl526_2
  perl-bio-phylo     bioconda/noarch::perl-bio-phylo-0.58-pl526_2
  perl-bio-samtools  bioconda/linux-64::perl-bio-samtools-1.43-pl526h1341992_1
  perl-bio-tools-ph~ bioconda/noarch::perl-bio-tools-phylo-paml-1.7.3-pl526_1
  perl-bio-tools-ru~ bioconda/noarch::perl-bio-tools-run-alignment-clustalw-1.7.4-pl526_1
  perl-bio-tools-ru~ bioconda/noarch::perl-bio-tools-run-alignment-tcoffee-1.7.4-pl526_2
  perl-bioperl       bioconda/noarch::perl-bioperl-1.7.2-pl526_11
  perl-bioperl-core  bioconda/noarch::perl-bioperl-core-1.007002-pl526_2
  perl-bioperl-run   bioconda/noarch::perl-bioperl-run-1.007002-pl526_4
  perl-business-isbn bioconda/linux-64::perl-business-isbn-3.004-pl526_0
  perl-business-isb~ bioconda/linux-64::perl-business-isbn-data-20140910.003-pl526_0
  perl-cache-cache   bioconda/linux-64::perl-cache-cache-1.08-pl526_0
  perl-capture-tiny  bioconda/linux-64::perl-capture-tiny-0.48-pl526_0
  perl-carp          bioconda/linux-64::perl-carp-1.38-pl526_3
  perl-cgi           bioconda/linux-64::perl-cgi-4.44-pl526h14c3975_1
  perl-class-data-i~ bioconda/linux-64::perl-class-data-inheritable-0.08-pl526_1
  perl-class-inspec~ bioconda/linux-64::perl-class-inspector-1.34-pl526_0
  perl-class-load    bioconda/linux-64::perl-class-load-0.25-pl526_0
  perl-class-load-xs bioconda/linux-64::perl-class-load-xs-0.10-pl526h6bb024c_2
  perl-class-method~ bioconda/linux-64::perl-class-method-modifiers-2.12-pl526_0
  perl-clone         bioconda/linux-64::perl-clone-0.42-pl526h516909a_0
  perl-common-sense  bioconda/linux-64::perl-common-sense-3.74-pl526_2
  perl-compress-raw~ bioconda/linux-64::perl-compress-raw-zlib-2.087-pl526hc9558a2_0
  perl-constant      bioconda/linux-64::perl-constant-1.33-pl526_1
  perl-convert-bina~ bioconda/linux-64::perl-convert-binary-c-0.78-pl526h6bb024c_3
  perl-convert-binh~ bioconda/linux-64::perl-convert-binhex-1.125-pl526_1
  perl-crypt-rc4     bioconda/linux-64::perl-crypt-rc4-2.02-pl526_1
  perl-data-dumper   bioconda/linux-64::perl-data-dumper-2.173-pl526_0
  perl-data-optlist  bioconda/linux-64::perl-data-optlist-0.110-pl526_2
  perl-data-stag     bioconda/linux-64::perl-data-stag-0.14-pl526_1
  perl-date-format   bioconda/linux-64::perl-date-format-2.30-pl526_2
  perl-db-file       bioconda/linux-64::perl-db-file-1.852-pl526h14c3975_0
  perl-dbd-sqlite    bioconda/linux-64::perl-dbd-sqlite-1.64-pl526h516909a_0
  perl-dbi           bioconda/linux-64::perl-dbi-1.642-pl526_0
  perl-devel-global~ bioconda/linux-64::perl-devel-globaldestruction-0.14-pl526_0
  perl-devel-overlo~ bioconda/linux-64::perl-devel-overloadinfo-0.005-pl526_0
  perl-devel-stackt~ bioconda/noarch::perl-devel-stacktrace-2.04-pl526_0
  perl-digest-hmac   bioconda/linux-64::perl-digest-hmac-1.03-pl526_3
  perl-digest-md5    bioconda/linux-64::perl-digest-md5-2.55-pl526_0
  perl-digest-perl-~ bioconda/linux-64::perl-digest-perl-md5-1.9-pl526_1
  perl-digest-sha1   bioconda/linux-64::perl-digest-sha1-2.13-pl526h6bb024c_1
  perl-dist-checkco~ bioconda/linux-64::perl-dist-checkconflicts-0.11-pl526_2
  perl-dynaloader    bioconda/linux-64::perl-dynaloader-1.25-pl526_1
  perl-email-date-f~ bioconda/linux-64::perl-email-date-format-1.005-pl526_2
  perl-encode        bioconda/linux-64::perl-encode-2.88-pl526_1
  perl-encode-locale bioconda/linux-64::perl-encode-locale-1.05-pl526_6
  perl-error         bioconda/linux-64::perl-error-0.17027-pl526_1
  perl-eval-closure  bioconda/linux-64::perl-eval-closure-0.14-pl526h6bb024c_4
  perl-exception-cl~ bioconda/linux-64::perl-exception-class-1.44-pl526_0
  perl-exporter      bioconda/linux-64::perl-exporter-5.72-pl526_1
  perl-exporter-tiny bioconda/linux-64::perl-exporter-tiny-1.002001-pl526_0
  perl-extutils-mak~ bioconda/linux-64::perl-extutils-makemaker-7.36-pl526_1
  perl-file-listing  bioconda/linux-64::perl-file-listing-6.04-pl526_1
  perl-file-path     bioconda/linux-64::perl-file-path-2.16-pl526_0
  perl-file-share    bioconda/linux-64::perl-file-share-0.25-pl526_2
  perl-file-sharedir bioconda/linux-64::perl-file-sharedir-1.116-pl526_1
  perl-file-sharedi~ bioconda/linux-64::perl-file-sharedir-install-0.13-pl526_0
  perl-file-slurp-t~ bioconda/linux-64::perl-file-slurp-tiny-0.004-pl526_1
  perl-file-sort     bioconda/linux-64::perl-file-sort-1.01-pl526_2
  perl-file-temp     bioconda/linux-64::perl-file-temp-0.2304-pl526_2
  perl-file-which    bioconda/linux-64::perl-file-which-1.23-pl526_0
  perl-font-afm      bioconda/linux-64::perl-font-afm-1.20-pl526_2
  perl-font-ttf      bioconda/linux-64::perl-font-ttf-1.06-pl526_0
  perl-gd            bioconda/linux-64::perl-gd-2.71-pl526he860b03_0
  perl-getopt-long   bioconda/linux-64::perl-getopt-long-2.50-pl526_1
  perl-graph         bioconda/linux-64::perl-graph-0.9704-pl526_1
  perl-graphviz      bioconda/linux-64::perl-graphviz-2.24-pl526h734ff71_0
  perl-html-element~ bioconda/linux-64::perl-html-element-extended-1.18-pl526_1
  perl-html-entitie~ bioconda/linux-64::perl-html-entities-numbered-0.04-pl526_1
  perl-html-formatt~ bioconda/linux-64::perl-html-formatter-2.16-pl526_0
  perl-html-parser   bioconda/linux-64::perl-html-parser-3.72-pl526h6bb024c_5
  perl-html-tableex~ bioconda/linux-64::perl-html-tableextract-2.13-pl526_2
  perl-html-tagset   bioconda/linux-64::perl-html-tagset-3.20-pl526_3
  perl-html-tidy     bioconda/linux-64::perl-html-tidy-1.60-pl526_0
  perl-html-tree     bioconda/linux-64::perl-html-tree-5.07-pl526_1
  perl-html-treebui~ bioconda/linux-64::perl-html-treebuilder-xpath-0.14-pl526_1
  perl-http-cookies  bioconda/linux-64::perl-http-cookies-6.04-pl526_0
  perl-http-daemon   bioconda/linux-64::perl-http-daemon-6.01-pl526_1
  perl-http-date     bioconda/linux-64::perl-http-date-6.02-pl526_3
  perl-http-message  bioconda/linux-64::perl-http-message-6.18-pl526_0
  perl-http-negotia~ bioconda/linux-64::perl-http-negotiate-6.01-pl526_3
  perl-image-info    bioconda/linux-64::perl-image-info-1.38-pl526_1
  perl-image-size    bioconda/linux-64::perl-image-size-3.300-pl526_2
  perl-io-html       bioconda/linux-64::perl-io-html-1.001-pl526_2
  perl-io-sessionda~ bioconda/linux-64::perl-io-sessiondata-1.03-pl526_1
  perl-io-socket-ssl bioconda/linux-64::perl-io-socket-ssl-2.066-pl526_0
  perl-io-string     bioconda/linux-64::perl-io-string-1.08-pl526_3
  perl-io-stringy    bioconda/linux-64::perl-io-stringy-2.111-pl526_1
  perl-io-tty        bioconda/linux-64::perl-io-tty-1.12-pl526_1
  perl-ipc-run       bioconda/linux-64::perl-ipc-run-20180523.0-pl526_0
  perl-ipc-sharelite bioconda/linux-64::perl-ipc-sharelite-0.17-pl526h6bb024c_1
  perl-jcode         bioconda/linux-64::perl-jcode-2.07-pl526_2
  perl-json          bioconda/linux-64::perl-json-4.02-pl526_0
  perl-json-xs       bioconda/linux-64::perl-json-xs-2.34-pl526h6bb024c_3
  perl-lib           bioconda/linux-64::perl-lib-0.63-pl526_1
  perl-libwww-perl   bioconda/noarch::perl-libwww-perl-6.39-pl526_0
  perl-libxml-perl   bioconda/linux-64::perl-libxml-perl-0.08-pl526_2
  perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-0.428-pl526_1
  perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.428-pl526_0
  perl-lwp-mediatyp~ bioconda/linux-64::perl-lwp-mediatypes-6.04-pl526_0
  perl-lwp-protocol~ bioconda/linux-64::perl-lwp-protocol-https-6.07-pl526_4
  perl-lwp-simple    bioconda/linux-64::perl-lwp-simple-6.15-pl526h470a237_4
  perl-mailtools     bioconda/noarch::perl-mailtools-2.21-pl526_0
  perl-math-cdf      bioconda/linux-64::perl-math-cdf-0.1-pl526h14c3975_5
  perl-math-derivat~ bioconda/linux-64::perl-math-derivative-1.01-pl526_0
  perl-math-random   bioconda/linux-64::perl-math-random-0.72-pl526h14c3975_2
  perl-math-spline   bioconda/linux-64::perl-math-spline-0.02-pl526_2
  perl-mime-base64   bioconda/linux-64::perl-mime-base64-3.15-pl526_1
  perl-mime-lite     bioconda/linux-64::perl-mime-lite-3.030-pl526_1
  perl-mime-tools    bioconda/linux-64::perl-mime-tools-5.508-pl526_1
  perl-mime-types    bioconda/linux-64::perl-mime-types-2.17-pl526_0
  perl-mldbm         bioconda/linux-64::perl-mldbm-2.05-pl526_1
  perl-module-imple~ bioconda/linux-64::perl-module-implementation-0.09-pl526_2
  perl-module-runti~ bioconda/linux-64::perl-module-runtime-0.016-pl526_1
  perl-module-runti~ bioconda/linux-64::perl-module-runtime-conflicts-0.003-pl526_0
  perl-moo           bioconda/linux-64::perl-moo-2.003004-pl526_0
  perl-moose         bioconda/linux-64::perl-moose-2.2011-pl526hf484d3e_1
  perl-mozilla-ca    bioconda/linux-64::perl-mozilla-ca-20180117-pl526_1
  perl-mro-compat    bioconda/linux-64::perl-mro-compat-0.13-pl526_0
  perl-net-http      bioconda/noarch::perl-net-http-6.19-pl526_0
  perl-net-ssleay    bioconda/linux-64::perl-net-ssleay-1.88-pl526h90d6eec_0
  perl-ntlm          bioconda/linux-64::perl-ntlm-1.09-pl526_4
  perl-ole-storage_~ bioconda/linux-64::perl-ole-storage_lite-0.19-pl526_3
  perl-package-depr~ bioconda/linux-64::perl-package-deprecationmanager-0.17-pl526_0
  perl-package-stash bioconda/linux-64::perl-package-stash-0.38-pl526hf484d3e_1
  perl-package-stas~ bioconda/linux-64::perl-package-stash-xs-0.28-pl526hf484d3e_1
  perl-params-util   bioconda/linux-64::perl-params-util-1.07-pl526h6bb024c_4
  perl-parent        bioconda/linux-64::perl-parent-0.236-pl526_1
  perl-parse-recdes~ bioconda/linux-64::perl-parse-recdescent-1.967015-pl526_0
  perl-pathtools     bioconda/linux-64::perl-pathtools-3.75-pl526h14c3975_1
  perl-pdf-api2      bioconda/noarch::perl-pdf-api2-2.035-pl526_0
  perl-pod-escapes   bioconda/linux-64::perl-pod-escapes-1.07-pl526_1
  perl-pod-usage     bioconda/linux-64::perl-pod-usage-1.69-pl526_1
  perl-postscript    bioconda/linux-64::perl-postscript-0.06-pl526_2
  perl-regexp-common bioconda/linux-64::perl-regexp-common-2017060201-pl526_0
  perl-role-tiny     bioconda/noarch::perl-role-tiny-2.000008-pl526_0
  perl-scalar-list-~ bioconda/linux-64::perl-scalar-list-utils-1.52-pl526h516909a_0
  perl-set-scalar    bioconda/linux-64::perl-set-scalar-1.29-pl526_2
  perl-soap-lite     bioconda/linux-64::perl-soap-lite-1.19-pl526_1
  perl-socket        bioconda/linux-64::perl-socket-2.027-pl526_1
  perl-sort-natural~ bioconda/linux-64::perl-sort-naturally-1.03-pl526_2
  perl-spreadsheet-~ bioconda/linux-64::perl-spreadsheet-parseexcel-0.65-pl526_2
  perl-spreadsheet-~ bioconda/linux-64::perl-spreadsheet-writeexcel-2.40-pl526_2
  perl-statistics-d~ bioconda/linux-64::perl-statistics-descriptive-3.0702-pl526_0
  perl-statistics-r  bioconda/linux-64::perl-statistics-r-0.34-pl526r351_3
  perl-storable      bioconda/linux-64::perl-storable-3.15-pl526h14c3975_0
  perl-sub-exporter  bioconda/linux-64::perl-sub-exporter-0.987-pl526_2
  perl-sub-exporter~ bioconda/linux-64::perl-sub-exporter-progressive-0.001013-pl526_0
  perl-sub-identify  bioconda/linux-64::perl-sub-identify-0.14-pl526h14c3975_0
  perl-sub-install   bioconda/linux-64::perl-sub-install-0.928-pl526_2
  perl-sub-name      bioconda/linux-64::perl-sub-name-0.21-pl526_1
  perl-sub-quote     bioconda/linux-64::perl-sub-quote-2.006003-pl526_1
  perl-sub-uplevel   bioconda/linux-64::perl-sub-uplevel-0.2800-pl526h14c3975_2
  perl-svg           bioconda/linux-64::perl-svg-2.84-pl526_0
  perl-svg-graph     bioconda/linux-64::perl-svg-graph-0.02-pl526_3
  perl-task-weaken   bioconda/linux-64::perl-task-weaken-1.06-pl526_0
  perl-template-too~ bioconda/linux-64::perl-template-toolkit-2.26-pl526_1
  perl-test          bioconda/linux-64::perl-test-1.26-pl526_1
  perl-test-deep     bioconda/linux-64::perl-test-deep-1.128-pl526_1
  perl-test-differe~ bioconda/noarch::perl-test-differences-0.67-pl526_0
  perl-test-excepti~ bioconda/linux-64::perl-test-exception-0.43-pl526_2
  perl-test-harness  bioconda/linux-64::perl-test-harness-3.42-pl526_0
  perl-test-leaktra~ bioconda/linux-64::perl-test-leaktrace-0.16-pl526h14c3975_2
  perl-test-most     bioconda/linux-64::perl-test-most-0.35-pl526_0
  perl-test-require~ bioconda/linux-64::perl-test-requiresinternet-0.05-pl526_0
  perl-test-warn     bioconda/linux-64::perl-test-warn-0.36-pl526_1
  perl-text-balanced bioconda/linux-64::perl-text-balanced-2.03-pl526_3
  perl-text-diff     bioconda/linux-64::perl-text-diff-1.45-pl526_0
  perl-text-wrap     bioconda/linux-64::perl-text-wrap-2013.0523-pl526_1
  perl-tie-ixhash    bioconda/linux-64::perl-tie-ixhash-1.23-pl526_2
  perl-time-hires    bioconda/linux-64::perl-time-hires-1.9760-pl526h14c3975_1
  perl-time-local    bioconda/linux-64::perl-time-local-1.28-pl526_1
  perl-timedate      bioconda/linux-64::perl-timedate-2.30-pl526_1
  perl-tree-dag_node bioconda/linux-64::perl-tree-dag_node-1.31-pl526_0
  perl-try-tiny      bioconda/linux-64::perl-try-tiny-0.30-pl526_1
  perl-type-tiny     bioconda/linux-64::perl-type-tiny-1.004004-pl526_0
  perl-types-serial~ bioconda/linux-64::perl-types-serialiser-1.0-pl526_2
  perl-unicode-map   bioconda/linux-64::perl-unicode-map-0.112-pl526h6bb024c_3
  perl-uri           bioconda/linux-64::perl-uri-1.76-pl526_0
  perl-www-robotrul~ bioconda/linux-64::perl-www-robotrules-6.02-pl526_3
  perl-xml-dom       bioconda/linux-64::perl-xml-dom-1.46-pl526_0
  perl-xml-dom-xpath bioconda/linux-64::perl-xml-dom-xpath-0.14-pl526_1
  perl-xml-filter-b~ bioconda/linux-64::perl-xml-filter-buffertext-1.01-pl526_2
  perl-xml-libxml    bioconda/linux-64::perl-xml-libxml-2.0132-pl526h7ec2d77_1
  perl-xml-libxslt   bioconda/linux-64::perl-xml-libxslt-1.94-pl526_1
  perl-xml-namespac~ bioconda/linux-64::perl-xml-namespacesupport-1.12-pl526_0
  perl-xml-parser    bioconda/linux-64::perl-xml-parser-2.44-pl526h4e0c4b3_7
  perl-xml-regexp    bioconda/linux-64::perl-xml-regexp-0.04-pl526_2
  perl-xml-sax       bioconda/noarch::perl-xml-sax-1.02-pl526_0
  perl-xml-sax-base  bioconda/linux-64::perl-xml-sax-base-1.09-pl526_0
  perl-xml-sax-expat bioconda/linux-64::perl-xml-sax-expat-0.51-pl526_3
  perl-xml-sax-writ~ bioconda/linux-64::perl-xml-sax-writer-0.57-pl526_0
  perl-xml-simple    bioconda/linux-64::perl-xml-simple-2.25-pl526_1
  perl-xml-twig      bioconda/linux-64::perl-xml-twig-3.52-pl526_2
  perl-xml-writer    bioconda/linux-64::perl-xml-writer-0.625-pl526_2
  perl-xml-xpath     bioconda/linux-64::perl-xml-xpath-1.44-pl526_0
  perl-xml-xpatheng~ bioconda/linux-64::perl-xml-xpathengine-0.14-pl526_2
  perl-xsloader      bioconda/linux-64::perl-xsloader-0.24-pl526_0
  perl-yaml          bioconda/noarch::perl-yaml-1.29-pl526_0
  pixman             conda-forge/linux-64::pixman-0.38.0-h516909a_1003
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h14c3975_1001
  r-base             conda-forge/linux-64::r-base-3.5.1-hc461eb7_1012
  t_coffee           bioconda/linux-64::t_coffee-11.0.8-py37hea885bf_8
  tidyp              bioconda/linux-64::tidyp-1.04-1
  tktable            conda-forge/linux-64::tktable-2.10-h555a92e_3
  xorg-kbproto       conda-forge/linux-64::xorg-kbproto-1.0.7-h14c3975_1002
  xorg-libice        conda-forge/linux-64::xorg-libice-1.0.10-h516909a_0
  xorg-libsm         conda-forge/linux-64::xorg-libsm-1.2.3-h84519dc_1000
  xorg-libx11        conda-forge/linux-64::xorg-libx11-1.6.9-h516909a_0
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.9-h14c3975_0
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h516909a_0
  xorg-libxext       conda-forge/linux-64::xorg-libxext-1.3.4-h516909a_0
  xorg-libxpm        conda-forge/linux-64::xorg-libxpm-3.5.13-h516909a_0
  xorg-libxrender    conda-forge/linux-64::xorg-libxrender-0.9.10-h516909a_1002
  xorg-libxt         conda-forge/linux-64::xorg-libxt-1.1.5-h516909a_1003
  xorg-renderproto   conda-forge/linux-64::xorg-renderproto-0.11.1-h14c3975_1002
  xorg-xextproto     conda-forge/linux-64::xorg-xextproto-7.3.0-h14c3975_1002
  xorg-xproto        conda-forge/linux-64::xorg-xproto-7.0.31-h14c3975_1007
  zstd               conda-forge/linux-64::zstd-1.4.4-h3b9ef0a_1

The following packages will be DOWNGRADED:

  certifi                                 2019.11.28-py38_0 --> 2019.11.28-py37_0
  pip                                         19.3.1-py38_0 --> 19.3.1-py37_0
  python                                   3.8.1-h357f687_1 --> 3.7.6-h357f687_2
  setuptools                                  44.0.0-py38_0 --> 44.0.0-py37_0
  wheel                                       0.33.6-py38_0 --> 0.33.6-py37_0

Proceed ([y]/n)? y

Downloading and Extracting Packages
gfortran_impl_linux- | 9.4 MB    | ################################################################################################################################################################# | 100% 
gxx_impl_linux-64-7. | 19.1 MB   | ################################################################################################################################################################# | 100% 
gcc_impl_linux-64-7. | 70.6 MB   | ################################################################################################################################################################# | 100% 
libgfortran-ng-7.3.0 | 1.7 MB    | ################################################################################################################################################################# | 100% 
Preparing transaction: done
Verifying transaction: failed

CondaMultiError: CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'lib/cairo/libcairo-trace.a'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'lib/libcairo-gobject.a'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'lib/libcairo-script-interpreter.a'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'lib/libcairo.a'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'share/gtk-doc/html/cairo/cairo-Paths.html'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'share/gtk-doc/html/cairo/cairo-cairo-pattern-t.html'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'share/gtk-doc/html/cairo/cairo-cairo-surface-t.html'
specified in the package manifest cannot be found.

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'share/gtk-doc/html/cairo/cairo-cairo-t.html'
specified in the package manifest cannot be found.

SafetyError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'share/gtk-doc/html/cairo/cairo-text.html'
has an incorrect size.
  reported size: 80208 bytes
  actual size: 0 bytes

CondaVerificationError: The package for cairo located at /work/waterhouse_team/miniconda2/pkgs/cairo-1.16.0-hfb77d84_1002
appears to be corrupted. The path 'share/gtk-doc/html/cairo/index-all.html'
specified in the package manifest cannot be found.

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Config.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP::Authen::Ntlm.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'man/man3/Sub::Exporter::Util.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'man/man3/Net::HTTP::NB.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTML::TokeParser.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-sub-install-0.928-pl526_2, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'man/man3/Sub::Install.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-cookies-6.04-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Cookies/Netscape.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/Heuristic.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/Net/HTTP/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'man/man3/Sub::Exporter::Cookbook.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/ldapi.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/ssh.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_server.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Hungarian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'bin/lwp-request'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/RobotUA.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP::MemberMixin.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-www-robotrules-6.02-pl526_3
  path: 'lib/site_perl/5.26.2/WWW/RobotRules.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Headers/Util.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/TigrinyaEritrean.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/HTML/Parser.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/urn/isbn.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Gedeo.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-negotiate-6.01-pl526_3
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/HTTP/Negotiate/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/gopher.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'lib/site_perl/5.26.2/Sub/Exporter.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man1/lwp-mirror.1'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'man/man3/Net::HTTP::Methods.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Headers::ETag.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_userpass.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'bin/lwp-download'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-sub-install-0.928-pl526_2, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'lib/site_perl/5.26.2/Sub/Install.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-daemon-6.01-pl526_1
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/HTTP/Daemon/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-params-util-1.07-pl526h6bb024c_4, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'man/man3/Params::Util.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Request/Common.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Response.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-http-date-6.02-pl526_3, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/HTTP/Date.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-daemon-6.01-pl526_1
  path: 'lib/site_perl/5.26.2/HTTP/Daemon.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTML::HeadParser.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Headers::Auth.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-http-date-6.02-pl526_3, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTTP::Date.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Simple.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Parse.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Czech.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/mailto.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::file.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/file/FAT.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/rtsp.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man1/lwp-request.1'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_query.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-data-optlist-0.110-pl526_2, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/Data/OptList/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'man/man3/Net::HTTPS.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-cookies-6.04-pl526_0
  path: 'man/man3/HTTP::Cookies::Netscape.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_punycode.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-try-tiny-0.30-pl526_1, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/Try/Tiny.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP::RobotUA.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/gopher.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-daemon-6.01-pl526_1
  path: 'man/man3/HTTP::Daemon.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::WithBase.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/ftp.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/ldap.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Russian_cp1251.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/mailto.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'man/man3/Net::HTTP.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP::Debug.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/file/Unix.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Response.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Brazilian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP::UserAgent.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/ConnCache.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/nogo.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/rsync.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP::Simple.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Finnish.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_foreign.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-io-html-1.001-pl526_2, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/IO::HTML.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'bin/lwp-mirror'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Afar.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-cookies-6.04-pl526_0
  path: 'man/man3/HTTP::Cookies::Microsoft.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/WithBase.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/pop.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-data-optlist-0.110-pl526_2, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'man/man3/Data::OptList.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/https.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_login.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/HTML/Entities.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/MemberMixin.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Headers.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Somali.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Headers::Util.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Austrian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/loopback.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Italian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::data.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTML::Filter.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/DebugFile.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'lib/site_perl/5.26.2/Net/HTTP/NB.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/nntp.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/URI/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-try-tiny-0.30-pl526_1, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/Try/Tiny/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Oromo.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/Date/Parse/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/file/Base.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Chinese.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/news.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/URL.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/file/Mac.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'lib/site_perl/5.26.2/Sub/Exporter/Util.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_ldap.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'man/man3/Sub::Exporter::Tutorial.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'lib/site_perl/5.26.2/Net/HTTP/Methods.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/rlogin.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-params-util-1.07-pl526h6bb024c_4, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'lib/site_perl/5.26.2/Params/Util.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Turkish.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'lib/site_perl/5.26.2/Net/HTTPS.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-tagset-3.20-pl526_3, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/HTML/Tagset/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-algorithm-diff-1.1903-pl526_2, bioconda::perl-algorithm-munkres-0.08-pl526_1, bioconda::perl-appconfig-1.71-pl526_1, bioconda::perl-capture-tiny-0.48-pl526_0, bioconda::perl-class-data-inheritable-0.08-pl526_1, bioconda::perl-class-inspector-1.34-pl526_0, bioconda::perl-convert-binary-c-0.78-pl526h6bb024c_3, bioconda::perl-crypt-rc4-2.02-pl526_1, bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-devel-stacktrace-2.04-pl526_0, bioconda::perl-digest-hmac-1.03-pl526_3, bioconda::perl-digest-md5-2.55-pl526_0, bioconda::perl-digest-perl-md5-1.9-pl526_1, bioconda::perl-email-date-format-1.005-pl526_2, bioconda::perl-extutils-makemaker-7.36-pl526_1, bioconda::perl-file-slurp-tiny-0.004-pl526_1, bioconda::perl-file-sort-1.01-pl526_2, bioconda::perl-font-afm-1.20-pl526_2, bioconda::perl-getopt-long-2.50-pl526_1, bioconda::perl-graph-0.9704-pl526_1, bioconda::perl-html-entities-numbered-0.04-pl526_1, bioconda::perl-html-tagset-3.20-pl526_3, bioconda::perl-io-html-1.001-pl526_2, bioconda::perl-io-sessiondata-1.03-pl526_1, bioconda::perl-io-string-1.08-pl526_3, bioconda::perl-io-stringy-2.111-pl526_1, bioconda::perl-io-tty-1.12-pl526_1, bioconda::perl-jcode-2.07-pl526_2, bioconda::perl-math-cdf-0.1-pl526h14c3975_5, bioconda::perl-math-random-0.72-pl526h14c3975_2, bioconda::perl-mime-types-2.17-pl526_0, bioconda::perl-ole-storage_lite-0.19-pl526_3, bioconda::perl-postscript-0.06-pl526_2, bioconda::perl-set-scalar-1.29-pl526_2, bioconda::perl-sort-naturally-1.03-pl526_2, bioconda::perl-sub-exporter-progressive-0.001013-pl526_0, bioconda::perl-sub-uplevel-0.2800-pl526h14c3975_2, bioconda::perl-svg-2.84-pl526_0, bioconda::perl-task-weaken-1.06-pl526_0, bioconda::perl-test-deep-1.128-pl526_1, bioconda::perl-test-leaktrace-0.16-pl526h14c3975_2, bioconda::perl-timedate-2.30-pl526_1, bioconda::perl-unicode-map-0.112-pl526h6bb024c_3, bioconda::perl-xml-regexp-0.04-pl526_2, bioconda::perl-xml-writer-0.625-pl526_2, bioconda::perl-xml-xpathengine-0.14-pl526_2, bioconda::perl-db-file-1.852-pl526h14c3975_0, bioconda::perl-libxml-perl-0.08-pl526_2, bioconda::perl-math-spline-0.02-pl526_2, bioconda::perl-role-tiny-2.000008-pl526_0, bioconda::perl-xml-filter-buffertext-1.01-pl526_2, bioconda::perl-json-4.02-pl526_0
  path: 'lib/5.26.2/x86_64-linux-thread-multi/perllocal.pod'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Request.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-mediatypes-6.04-pl526_0, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/LWP/MediaTypes.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'man/man3/Date::Language.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Format.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/HTML/TokeParser.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/snews.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP::ConnCache.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/urn/oid.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-io-html-1.001-pl526_2, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/IO/HTML/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::QueryParam.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-www-robotrules-6.02-pl526_3
  path: 'lib/site_perl/5.26.2/WWW/RobotRules/AnyDBM_File.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/German.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Authen/Basic.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Tigrinya.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/mms.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-mediatypes-6.04-pl526_0, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/LWP/MediaTypes/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Status.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/data.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/tn3270.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/http.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/rtspu.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTML::LinkExtor.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/sftp.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/file.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-file-listing-6.04-pl526_1
  path: 'lib/site_perl/5.26.2/File/Listing.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Russian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-cookies-6.04-pl526_0
  path: 'man/man3/HTTP::Cookies.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Request.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'man/man3/Sub::Exporter.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-mediatypes-6.04-pl526_0, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/LWP::MediaTypes.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Headers/Auth.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTML::Entities.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/ldaps.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::ldap.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/HTML/LinkExtor.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/nntp.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Headers/ETag.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Headers.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::Split.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Authen/Ntlm.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-cookies-6.04-pl526_0
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/HTTP/Cookies/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/QueryParam.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-io-html-1.001-pl526_2, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/IO/HTML.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Status.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/ftp.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man1/lwp-dump.1'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTML::Parser.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Authen/Digest.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/Sub/Exporter/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'man/man3/Date::Parse.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-tagset-3.20-pl526_3, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTML::Tagset.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Bulgarian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Dutch.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/file/OS2.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Icelandic.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-file-listing-6.04-pl526_1
  path: 'man/man3/File::Listing.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-file-listing-6.04-pl526_1
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/File/Listing/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/HTML/Filter.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::Escape.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/IRI.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Greek.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/http.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'man/man3/Date::Format.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'lib/site_perl/5.26.2/Sub/Exporter/Tutorial.pod'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'man/man3/Date::Language::Hungarian.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-mediatypes-6.04-pl526_0, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/LWP/media.types'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/HTML/Parser/Parser.so'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_idna.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Swedish.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'bin/lwp-dump'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/sip.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/file/QNX.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/file/Win32.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'man/man3/Time::Zone.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_generic.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Spanish.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Config.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-http-date-6.02-pl526_3, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/HTTP/Date/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/HTML/PullParser.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-negotiate-6.01-pl526_3
  path: 'man/man3/HTTP::Negotiate.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/HTML/HeadParser.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Debug.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-www-robotrules-6.02-pl526_3
  path: 'man/man3/WWW::RobotRules::AnyDBM_File.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Danish.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Time/Zone.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Message.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man1/lwp-download.1'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/urn.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/TigrinyaEthiopian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-negotiate-6.01-pl526_3
  path: 'lib/site_perl/5.26.2/HTTP/Negotiate.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/telnet.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/Split.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/HTML/Parser/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/sips.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/UserAgent.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Norwegian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/cpan.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-net-http-6.19-pl526_0
  path: 'lib/site_perl/5.26.2/Net/HTTP.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-parser-3.72-pl526h6bb024c_5, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/HTML::PullParser.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'man/man3/Date::Language::Bulgarian.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Message.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-data-optlist-0.110-pl526_2, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'lib/site_perl/5.26.2/Data/OptList.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-package-stash-0.38-pl526hf484d3e_1, bioconda::perl-sub-exporter-0.987-pl526_2
  path: 'lib/site_perl/5.26.2/Sub/Exporter/Cookbook.pod'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::_punycode.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::URL.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-sub-install-0.928-pl526_2, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/Sub/Install/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/English.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/file.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'man/man3/LWP::Protocol.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI::Heuristic.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-cookies-6.04-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Cookies/Microsoft.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-www-robotrules-6.02-pl526_3
  path: 'man/man3/WWW::RobotRules.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-www-robotrules-6.02-pl526_3
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/WWW/RobotRules/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/French.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-params-util-1.07-pl526h6bb024c_4, bioconda::perl-package-stash-0.38-pl526hf484d3e_1
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/Params/Util/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/Escape.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-cookies-6.04-pl526_0
  path: 'lib/site_perl/5.26.2/HTTP/Cookies.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/HTTP/Message/.packlist'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Russian_koi8r.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'lib/site_perl/5.26.2/URI/_segment.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-html-tagset-3.20-pl526_3, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'lib/site_perl/5.26.2/HTML/Tagset.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-try-tiny-0.30-pl526_1, bioconda::perl-lwp-simple-6.15-pl526h470a237_4
  path: 'man/man3/Try::Tiny.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Romanian.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-http-message-6.18-pl526_0
  path: 'man/man3/HTTP::Request::Common.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Amharic.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Chinese_GB.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-uri-1.76-pl526_0
  path: 'man/man3/URI.3'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-lwp-simple-6.15-pl526h470a237_4, bioconda::perl-libwww-perl-6.39-pl526_0
  path: 'lib/site_perl/5.26.2/LWP/Protocol/data.pm'

ClobberError: This transaction has incompatible packages due to a shared path.
  packages: bioconda::perl-date-format-2.30-pl526_2, bioconda::perl-timedate-2.30-pl526_1
  path: 'lib/site_perl/5.26.2/Date/Language/Sidama.pm'

(agat) lorencm@lyra04:~>

What did I miss?

Thank you in advance

Juke34 commented 4 years ago

By updating conda I meant: conda update -n base -c defaults conda

From your result we can see it is not related to python3. What we can do is to check the channel priorities. Could you show the ‘.condarc’ file?

Another way will just be to reinstall conda (miniconda3 or anaconda3), but you will loose all conda env you already have. Of you have just a few it could worth it.

Juke34 commented 4 years ago

Did you fix it at the end?