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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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gapfiller recipe requires boost version that is not available in bioconda or conda-Forge #21397

Open jvollme opened 4 years ago

jvollme commented 4 years ago

The gapfiller recipe requires an old boost version (<=1.57.0) that apparently is not available neither in conda-forge nor in bioconda (anymore?).

As a result, trying to install gapfiller, even in a new, clean environment, returns this error:

Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.                        failed

PackagesNotFoundError: The following packages are not available from current channels:

  - boost[version='>=1.57.0,<1.57.1.0a0']

Current channels:

  - https://conda.anaconda.org/conda-forge/linux-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://conda.anaconda.org/bioconda/linux-64
  - https://conda.anaconda.org/bioconda/noarch
  - https://repo.anaconda.com/pkgs/main/linux-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/linux-64
  - https://repo.anaconda.com/pkgs/r/noarch

is there another channel I can add to get older boost versions via conda and use gapfiller via bioconda again?

xvazquezc commented 4 years ago

Just found out this myself. Earliest available boost version is 1.60.0 in conda-forge