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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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Meme: template error in CentriMo #22909

Open dcdxy opened 4 years ago

dcdxy commented 4 years ago

I'm receiving the same issue described here, where CentriMo cannot access its template file and consequently does not output a TSV data file.

Starting centrimo: centrimo [...]
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
Bad file name.
FATAL: Template does not contain data section.

centrimo exited with error code 1

The solution in the Biostars post of installing MEME using the bioconda/label/cf201901 channel does not work in my case, since the latest version on cf201901 is 5.0.2, and I would like to use features from version 5.1.0+. Would anyone be able to fix this problem on the main branch, or update the version on cf201901 (or propose another workaround)? Thanks in advance.

$ centrimo --version
5.1.1
dariober commented 4 years ago

Bump - I'm having the same issue. I'm happy with 5.0.2 for now but it would be nice to have this fixed.

CriticalSci commented 3 years ago

Just installed via conda install -c bioconda meme=5.3.0 and this is still an issue.

It has been pointed out that it may because the conda install points to Python2.7 dependencies instead of Python3 https://groups.google.com/g/meme-suite/c/n-RJzqZNPNQ/m/weRPM_fjAAAJ