Closed alanhoyle closed 1 year ago
Why not use the biocontainers version?
docker pull quay.io/biocontainers/ensembl-vep:103.1--pl5262h4a94de4_2
https://biocontainers.pro/tools/ensembl-vep.
These images are built in essentially the same way as you're trying to to. M
This is part of a workflow and our container strategy is to create one image per workflow version. That way we version the whole shebang in parallel and only need to distribute the workflow and the associated image. VEP is only one tool of many in the workflow.
Heads up, I was able to create an environment
conda create -n test-ensemble -c conda-forge -c bioconda 'ensembl-vep=103.1'
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.10.3
latest version: 4.11.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /home/robert_petit/miniconda3/envs/test-ensemble
added / updated specs:
- ensembl-vep=103.1
The following packages will be downloaded:
package | build
---------------------------|-----------------
atk-1.0-2.36.0 | h3371d22_4 560 KB conda-forge
cairo-1.16.0 | ha00ac49_1009 1.5 MB conda-forge
clustalw-2.1 | h7d875b9_6 318 KB bioconda
ensembl-vep-103.1 | pl5262h4a94de4_2 3.0 MB bioconda
expat-2.4.4 | h9c3ff4c_0 183 KB conda-forge
font-ttf-dejavu-sans-mono-2.37| hab24e00_0 388 KB conda-forge
font-ttf-inconsolata-3.000 | h77eed37_0 94 KB conda-forge
font-ttf-source-code-pro-2.038| h77eed37_0 684 KB conda-forge
font-ttf-ubuntu-0.83 | hab24e00_0 1.9 MB conda-forge
fontconfig-2.13.94 | ha180cfb_0 323 KB conda-forge
fonts-conda-ecosystem-1 | 0 4 KB conda-forge
fonts-conda-forge-1 | 0 4 KB conda-forge
freetype-2.10.4 | h0708190_1 890 KB conda-forge
fribidi-1.0.10 | h36c2ea0_0 112 KB conda-forge
gdk-pixbuf-2.42.6 | h04a7f16_0 609 KB conda-forge
gettext-0.19.8.1 | h73d1719_1008 3.6 MB conda-forge
giflib-5.2.1 | h36c2ea0_2 77 KB conda-forge
graphite2-1.3.13 | h58526e2_1001 102 KB conda-forge
graphviz-2.50.0 | h8e749b2_2 3.0 MB conda-forge
gtk2-2.24.33 | h90689f9_2 7.4 MB conda-forge
gts-0.7.6 | h64030ff_2 411 KB conda-forge
harfbuzz-3.3.1 | hb4a5f5f_0 2.2 MB conda-forge
htslib-1.12 | h9093b5e_1 2.1 MB bioconda
libdb-6.2.32 | h9c3ff4c_0 23.3 MB conda-forge
libedit-3.1.20191231 | he28a2e2_2 121 KB conda-forge
libgd-2.3.3 | h3cfcdeb_1 267 KB conda-forge
libpng-1.6.37 | h21135ba_2 306 KB conda-forge
librsvg-2.52.5 | h0a9e6e8_2 5.3 MB conda-forge
libtool-2.4.6 | h9c3ff4c_1008 511 KB conda-forge
libuuid-2.32.1 | h7f98852_1000 28 KB conda-forge
libwebp-1.2.2 | h3452ae3_0 85 KB conda-forge
libwebp-base-1.2.2 | h7f98852_1 824 KB conda-forge
libxcb-1.13 | h7f98852_1004 391 KB conda-forge
libxslt-1.1.33 | h0ef7038_3 521 KB conda-forge
mysql-connector-c-6.1.11 | h6eb9d5d_1007 2.7 MB conda-forge
paml-4.9 | h779adbc_6 1.2 MB bioconda
pango-1.50.3 | h9967ed3_0 458 KB conda-forge
perl-aceperl-1.92 | pl526_2 149 KB bioconda
perl-algorithm-diff-1.1903 | pl526_2 34 KB bioconda
perl-algorithm-munkres-0.08| pl526_1 11 KB bioconda
perl-apache-test-1.40 | pl526_1 115 KB bioconda
perl-app-cpanminus-1.7044 | pl526_1 234 KB bioconda
perl-appconfig-1.71 | pl526_1 42 KB bioconda
perl-array-compare-3.0.1 | pl526_1 12 KB bioconda
perl-autoloader-5.74 | pl526_2 5 KB bioconda
perl-base-2.23 | pl526_1 10 KB bioconda
perl-bio-asn1-entrezgene-1.73| pl5262hdfd78af_2 23 KB bioconda
perl-bio-coordinate-1.007001| pl5262hdfd78af_2 35 KB bioconda
perl-bio-db-hts-3.01 | pl5262h22771d5_3 123 KB bioconda
perl-bio-featureio-1.6.905 | pl5262hdfd78af_3 40 KB bioconda
perl-bio-phylo-0.58 | pl5262hdfd78af_3 310 KB bioconda
perl-bio-samtools-1.43 | pl526h1341992_1 172 KB bioconda
perl-bio-tools-phylo-paml-1.7.3| pl5262hdfd78af_2 57 KB bioconda
perl-bio-tools-run-alignment-clustalw-1.7.4| pl5262hdfd78af_2 25 KB bioconda
perl-bio-tools-run-alignment-tcoffee-1.7.4| pl5262hdfd78af_3 24 KB bioconda
perl-bioperl-1.7.2 | pl526_11 13 KB bioconda
perl-bioperl-core-1.007002 | pl5262hdfd78af_3 3.2 MB bioconda
perl-bioperl-run-1.007002 | pl5262hdfd78af_5 431 KB bioconda
perl-business-isbn-3.004 | pl526_0 15 KB bioconda
perl-business-isbn-data-20140910.003| pl526_0 15 KB bioconda
perl-cache-cache-1.08 | pl526_0 31 KB bioconda
perl-capture-tiny-0.48 | pl526_0 17 KB bioconda
perl-cgi-4.44 | pl526h14c3975_1 116 KB bioconda
perl-class-data-inheritable-0.08| pl526_1 7 KB bioconda
perl-class-inspector-1.34 | pl526_0 14 KB bioconda
perl-class-load-0.25 | pl526_0 12 KB bioconda
perl-class-load-xs-0.10 | pl526h6bb024c_2 13 KB bioconda
perl-class-method-modifiers-2.12| pl526_0 13 KB bioconda
perl-clone-0.42 | pl526h516909a_0 13 KB bioconda
perl-constant-1.33 | pl526_1 10 KB bioconda
perl-convert-binary-c-0.78 | pl526h6bb024c_3 252 KB bioconda
perl-convert-binhex-1.125 | pl526_1 25 KB bioconda
perl-crypt-rc4-2.02 | pl526_1 8 KB bioconda
perl-data-dumper-2.173 | pl526_0 35 KB bioconda
perl-data-optlist-0.110 | pl526_2 10 KB bioconda
perl-data-stag-0.14 | pl526_1 78 KB bioconda
perl-date-format-2.30 | pl526_2 29 KB bioconda
perl-db-file-1.855 | pl526h516909a_0 53 KB bioconda
perl-dbd-mysql-4.046 | pl526h6bb024c_1 227 KB bioconda
perl-dbd-sqlite-1.64 | pl526h516909a_0 2.3 MB bioconda
perl-dbi-1.642 | pl526_0 549 KB bioconda
perl-devel-globaldestruction-0.14| pl526_0 7 KB bioconda
perl-devel-overloadinfo-0.005| pl526_0 8 KB bioconda
perl-devel-stacktrace-2.04 | pl526_0 16 KB bioconda
perl-digest-hmac-1.03 | pl526_3 9 KB bioconda
perl-digest-md5-2.55 | pl526_0 18 KB bioconda
perl-digest-perl-md5-1.9 | pl526_1 11 KB bioconda
perl-digest-sha1-2.13 | pl526h6bb024c_1 20 KB bioconda
perl-dist-checkconflicts-0.11| pl526_2 10 KB bioconda
perl-dynaloader-1.25 | pl526_1 3 KB bioconda
perl-email-date-format-1.005| pl526_2 8 KB bioconda
perl-encode-2.88 | pl526_1 2.1 MB bioconda
perl-encode-locale-1.05 | pl526_6 11 KB bioconda
perl-error-0.17027 | pl526_1 20 KB bioconda
perl-eval-closure-0.14 | pl526h6bb024c_4 11 KB bioconda
perl-exception-class-1.44 | pl526_0 19 KB bioconda
perl-file-listing-6.04 | pl526_1 9 KB bioconda
perl-file-path-2.16 | pl526_0 17 KB bioconda
perl-file-slurp-tiny-0.004 | pl526_1 8 KB bioconda
perl-file-sort-1.01 | pl526_2 18 KB bioconda
perl-file-temp-0.2304 | pl526_2 26 KB bioconda
perl-file-which-1.23 | pl526_0 12 KB bioconda
perl-font-afm-1.20 | pl526_2 14 KB bioconda
perl-font-ttf-1.06 | pl526_0 200 KB bioconda
perl-gd-2.68 | pl526he941832_0 112 KB bioconda
perl-getopt-long-2.50 | pl526_1 27 KB bioconda
perl-graph-0.9704 | pl526_1 73 KB bioconda
perl-graphviz-2.24 | pl526h734ff71_0 36 KB bioconda
perl-html-element-extended-1.18| pl526_1 24 KB bioconda
perl-html-entities-numbered-0.04| pl526_1 11 KB bioconda
perl-html-formatter-2.16 | pl526_0 30 KB bioconda
perl-html-parser-3.72 | pl526h6bb024c_5 66 KB bioconda
perl-html-tableextract-2.13| pl526_2 23 KB bioconda
perl-html-tagset-3.20 | pl526_3 12 KB bioconda
perl-html-tidy-1.60 | pl526_0 20 KB bioconda
perl-html-tree-5.07 | pl526_1 129 KB bioconda
perl-html-treebuilder-xpath-0.14| pl526_1 12 KB bioconda
perl-http-cookies-6.04 | pl526_0 19 KB bioconda
perl-http-daemon-6.01 | pl526_1 14 KB bioconda
perl-http-date-6.02 | pl526_3 10 KB bioconda
perl-http-message-6.18 | pl526_0 51 KB bioconda
perl-http-negotiate-6.01 | pl526_3 13 KB bioconda
perl-image-info-1.38 | pl526_1 41 KB bioconda
perl-image-size-3.300 | pl526_2 26 KB bioconda
perl-io-html-1.001 | pl526_2 13 KB bioconda
perl-io-sessiondata-1.03 | pl526_1 8 KB bioconda
perl-io-socket-ssl-2.066 | pl526_0 151 KB bioconda
perl-io-string-1.08 | pl526_3 10 KB bioconda
perl-io-stringy-2.111 | pl526_1 35 KB bioconda
perl-io-tty-1.12 | pl526_1 30 KB bioconda
perl-ipc-run-20180523.0 | pl526_0 74 KB bioconda
perl-ipc-sharelite-0.17 | pl526h6bb024c_1 24 KB bioconda
perl-jcode-2.07 | pl526_2 24 KB bioconda
perl-lib-0.63 | pl526_1 6 KB bioconda
perl-libwww-perl-6.39 | pl526_0 94 KB bioconda
perl-libxml-perl-0.08 | pl526_2 38 KB bioconda
perl-lwp-mediatypes-6.04 | pl526_0 22 KB bioconda
perl-lwp-protocol-https-6.07| pl526_4 9 KB bioconda
perl-lwp-simple-6.15 | pl526h470a237_4 348 KB bioconda
perl-mailtools-2.21 | pl526_0 48 KB bioconda
perl-math-cdf-0.1 | pl526h14c3975_5 69 KB bioconda
perl-math-derivative-1.01 | pl526_0 9 KB bioconda
perl-math-random-0.72 | pl526h14c3975_2 55 KB bioconda
perl-math-spline-0.02 | pl526_2 8 KB bioconda
perl-mime-base64-3.15 | pl526_1 15 KB bioconda
perl-mime-lite-3.030 | pl526_1 51 KB bioconda
perl-mime-tools-5.508 | pl526_1 113 KB bioconda
perl-mime-types-2.17 | pl526_0 56 KB bioconda
perl-mldbm-2.05 | pl526_1 15 KB bioconda
perl-module-implementation-0.09| pl526_2 9 KB bioconda
perl-module-runtime-0.016 | pl526_1 15 KB bioconda
perl-module-runtime-conflicts-0.003| pl526_0 7 KB bioconda
perl-moo-2.003004 | pl526_0 38 KB bioconda
perl-moose-2.2011 | pl526hf484d3e_1 444 KB bioconda
perl-mozilla-ca-20180117 | pl526_1 140 KB bioconda
perl-mro-compat-0.13 | pl526_0 10 KB bioconda
perl-net-http-6.19 | pl526_0 19 KB bioconda
perl-net-ssleay-1.88 | pl526h90d6eec_0 289 KB bioconda
perl-ntlm-1.09 | pl526_4 15 KB bioconda
perl-ole-storage_lite-0.19 | pl526_3 18 KB bioconda
perl-package-deprecationmanager-0.17| pl526_0 10 KB bioconda
perl-package-stash-0.38 | pl526hf484d3e_1 66 KB bioconda
perl-package-stash-xs-0.28 | pl526hf484d3e_1 21 KB bioconda
perl-params-util-1.07 | pl526h6bb024c_4 14 KB bioconda
perl-parent-0.236 | pl526_1 5 KB bioconda
perl-parse-recdescent-1.967015| pl526_0 71 KB bioconda
perl-pdf-api2-2.035 | pl526_0 2.3 MB bioconda
perl-perlio-gzip-0.20 | pl526h84994c4_1 17 KB bioconda
perl-pod-escapes-1.07 | pl526_1 10 KB bioconda
perl-pod-usage-1.69 | pl526_1 13 KB bioconda
perl-postscript-0.06 | pl526_2 22 KB bioconda
perl-role-tiny-2.000008 | pl526_0 15 KB bioconda
perl-sereal-4.007 | pl526_0 10 KB bioconda
perl-sereal-decoder-4.007 | pl526h14c3975_0 139 KB bioconda
perl-sereal-encoder-4.007 | pl526h14c3975_0 174 KB bioconda
perl-set-intervaltree-0.12 | pl526he1b5a44_0 30 KB bioconda
perl-set-scalar-1.29 | pl526_2 19 KB bioconda
perl-soap-lite-1.19 | pl526_1 117 KB bioconda
perl-socket-2.027 | pl526_1 31 KB bioconda
perl-sort-naturally-1.03 | pl526_2 14 KB bioconda
perl-spreadsheet-parseexcel-0.65| pl526_2 63 KB bioconda
perl-spreadsheet-writeexcel-2.40| pl526_2 259 KB bioconda
perl-statistics-descriptive-3.0702| pl526_0 32 KB bioconda
perl-storable-3.15 | pl526h14c3975_0 63 KB bioconda
perl-sub-exporter-0.987 | pl526_2 30 KB bioconda
perl-sub-exporter-progressive-0.001013| pl526_0 8 KB bioconda
perl-sub-identify-0.14 | pl526h14c3975_0 12 KB bioconda
perl-sub-install-0.928 | pl526_2 10 KB bioconda
perl-sub-name-0.21 | pl526_1 13 KB bioconda
perl-sub-quote-2.006003 | pl526_1 18 KB bioconda
perl-sub-uplevel-0.2800 | pl526h14c3975_2 13 KB bioconda
perl-svg-2.84 | pl526_0 37 KB bioconda
perl-svg-graph-0.02 | pl526_3 26 KB bioconda
perl-task-weaken-1.06 | pl526_0 8 KB bioconda
perl-template-toolkit-2.26 | pl526_1 319 KB bioconda
perl-test-1.26 | pl526_1 14 KB bioconda
perl-test-deep-1.128 | pl526_1 36 KB bioconda
perl-test-differences-0.67 | pl526_0 15 KB bioconda
perl-test-exception-0.43 | pl526_2 12 KB bioconda
perl-test-harness-3.42 | pl526_0 82 KB bioconda
perl-test-leaktrace-0.16 | pl526h14c3975_2 23 KB bioconda
perl-test-most-0.35 | pl526_0 18 KB bioconda
perl-test-requiresinternet-0.05| pl526_0 7 KB bioconda
perl-test-warn-0.36 | pl526_1 13 KB bioconda
perl-text-csv-2.00 | pl526_0 66 KB bioconda
perl-text-diff-1.45 | pl526_0 20 KB bioconda
perl-tie-ixhash-1.23 | pl526_2 11 KB bioconda
perl-time-hires-1.9760 | pl526h14c3975_1 25 KB bioconda
perl-time-local-1.28 | pl526_1 10 KB bioconda
perl-timedate-2.30 | pl526_1 29 KB bioconda
perl-tree-dag_node-1.31 | pl526_0 40 KB bioconda
perl-try-tiny-0.30 | pl526_1 17 KB bioconda
perl-type-tiny-1.004004 | pl526_0 119 KB bioconda
perl-unicode-map-0.112 | pl526h6bb024c_3 254 KB bioconda
perl-uri-1.76 | pl526_0 55 KB bioconda
perl-www-robotrules-6.02 | pl526_3 12 KB bioconda
perl-xml-dom-1.46 | pl526_0 56 KB bioconda
perl-xml-dom-xpath-0.14 | pl526_1 9 KB bioconda
perl-xml-filter-buffertext-1.01| pl526_2 7 KB bioconda
perl-xml-libxml-2.0132 | pl526h7ec2d77_1 260 KB bioconda
perl-xml-libxslt-1.94 | pl526_1 40 KB bioconda
perl-xml-namespacesupport-1.12| pl526_0 11 KB bioconda
perl-xml-parser-2.44_01 |pl5262hc3e0081_1002 165 KB conda-forge
perl-xml-regexp-0.04 | pl526_2 8 KB bioconda
perl-xml-sax-1.02 | pl526_0 36 KB bioconda
perl-xml-sax-base-1.09 | pl526_0 19 KB bioconda
perl-xml-sax-expat-0.51 | pl526_3 10 KB bioconda
perl-xml-sax-writer-0.57 | pl526_0 16 KB bioconda
perl-xml-simple-2.25 | pl526_1 48 KB bioconda
perl-xml-twig-3.52 | pl526_2 144 KB bioconda
perl-xml-writer-0.625 | pl526_2 18 KB bioconda
perl-xml-xpath-1.44 | pl526_0 42 KB bioconda
perl-xml-xpathengine-0.14 | pl526_2 26 KB bioconda
perl-yaml-1.29 | pl526_0 41 KB bioconda
pip-22.0.2 | pyhd8ed1ab_0 1.5 MB conda-forge
pthread-stubs-0.4 | h36c2ea0_1001 5 KB conda-forge
python-3.7.12 |hb7a2778_100_cpython 57.3 MB conda-forge
python_abi-3.7 | 2_cp37m 4 KB conda-forge
setuptools-60.6.0 | py37h89c1867_0 1.0 MB conda-forge
t_coffee-11.0.8 | py37hea885bf_8 33.2 MB bioconda
tidyp-1.04 | h779adbc_3 300 KB bioconda
unzip-6.0 | h7f98852_2 143 KB conda-forge
xorg-kbproto-1.0.7 | h7f98852_1002 27 KB conda-forge
xorg-libice-1.0.10 | h7f98852_0 58 KB conda-forge
xorg-libxau-1.0.9 | h7f98852_0 13 KB conda-forge
xorg-libxdmcp-1.1.3 | h7f98852_0 19 KB conda-forge
xorg-renderproto-0.11.1 | h7f98852_1002 9 KB conda-forge
xorg-xextproto-7.3.0 | h7f98852_1002 28 KB conda-forge
xorg-xproto-7.0.31 | h7f98852_1007 73 KB conda-forge
------------------------------------------------------------
Total: 179.0 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
atk-1.0 conda-forge/linux-64::atk-1.0-2.36.0-h3371d22_4
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
c-ares conda-forge/linux-64::c-ares-1.18.1-h7f98852_0
ca-certificates conda-forge/linux-64::ca-certificates-2021.10.8-ha878542_0
cairo conda-forge/linux-64::cairo-1.16.0-ha00ac49_1009
clustalw bioconda/linux-64::clustalw-2.1-h7d875b9_6
curl conda-forge/linux-64::curl-7.81.0-h2574ce0_0
ensembl-vep bioconda/noarch::ensembl-vep-103.1-pl5262h4a94de4_2
expat conda-forge/linux-64::expat-2.4.4-h9c3ff4c_0
font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0
font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0
font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0
font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-hab24e00_0
fontconfig conda-forge/linux-64::fontconfig-2.13.94-ha180cfb_0
fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0
fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-0
freetype conda-forge/linux-64::freetype-2.10.4-h0708190_1
fribidi conda-forge/linux-64::fribidi-1.0.10-h36c2ea0_0
gdk-pixbuf conda-forge/linux-64::gdk-pixbuf-2.42.6-h04a7f16_0
gettext conda-forge/linux-64::gettext-0.19.8.1-h73d1719_1008
giflib conda-forge/linux-64::giflib-5.2.1-h36c2ea0_2
graphite2 conda-forge/linux-64::graphite2-1.3.13-h58526e2_1001
graphviz conda-forge/linux-64::graphviz-2.50.0-h8e749b2_2
gtk2 conda-forge/linux-64::gtk2-2.24.33-h90689f9_2
gts conda-forge/linux-64::gts-0.7.6-h64030ff_2
harfbuzz conda-forge/linux-64::harfbuzz-3.3.1-hb4a5f5f_0
htslib bioconda/linux-64::htslib-1.12-h9093b5e_1
icu conda-forge/linux-64::icu-69.1-h9c3ff4c_0
jbig conda-forge/linux-64::jbig-2.1-h7f98852_2003
jpeg conda-forge/linux-64::jpeg-9e-h7f98852_0
krb5 conda-forge/linux-64::krb5-1.19.2-hcc1bbae_3
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2
lerc conda-forge/linux-64::lerc-2.2.1-h9c3ff4c_0
libcurl conda-forge/linux-64::libcurl-7.81.0-h2574ce0_0
libdb conda-forge/linux-64::libdb-6.2.32-h9c3ff4c_0
libdeflate conda-forge/linux-64::libdeflate-1.7-h7f98852_5
libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
libev conda-forge/linux-64::libev-4.33-h516909a_1
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-11.2.0-h1d223b6_12
libgd conda-forge/linux-64::libgd-2.3.3-h3cfcdeb_1
libglib conda-forge/linux-64::libglib-2.70.2-h174f98d_1
libgomp conda-forge/linux-64::libgomp-11.2.0-h1d223b6_12
libiconv conda-forge/linux-64::libiconv-1.16-h516909a_0
libnghttp2 conda-forge/linux-64::libnghttp2-1.46.0-h812cca2_0
libnsl conda-forge/linux-64::libnsl-2.0.0-h7f98852_0
libpng conda-forge/linux-64::libpng-1.6.37-h21135ba_2
librsvg conda-forge/linux-64::librsvg-2.52.5-h0a9e6e8_2
libssh2 conda-forge/linux-64::libssh2-1.10.0-ha56f1ee_2
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-11.2.0-he4da1e4_12
libtiff conda-forge/linux-64::libtiff-4.3.0-hf544144_1
libtool conda-forge/linux-64::libtool-2.4.6-h9c3ff4c_1008
libuuid conda-forge/linux-64::libuuid-2.32.1-h7f98852_1000
libwebp conda-forge/linux-64::libwebp-1.2.2-h3452ae3_0
libwebp-base conda-forge/linux-64::libwebp-base-1.2.2-h7f98852_1
libxcb conda-forge/linux-64::libxcb-1.13-h7f98852_1004
libxml2 conda-forge/linux-64::libxml2-2.9.12-h885dcf4_1
libxslt conda-forge/linux-64::libxslt-1.1.33-h0ef7038_3
libzlib conda-forge/linux-64::libzlib-1.2.11-h36c2ea0_1013
lz4-c conda-forge/linux-64::lz4-c-1.9.3-h9c3ff4c_1
mysql-connector-c conda-forge/linux-64::mysql-connector-c-6.1.11-h6eb9d5d_1007
ncurses conda-forge/linux-64::ncurses-6.3-h9c3ff4c_0
openssl conda-forge/linux-64::openssl-1.1.1l-h7f98852_0
paml bioconda/linux-64::paml-4.9-h779adbc_6
pango conda-forge/linux-64::pango-1.50.3-h9967ed3_0
pcre conda-forge/linux-64::pcre-8.45-h9c3ff4c_0
perl conda-forge/linux-64::perl-5.26.2-h36c2ea0_1008
perl-aceperl bioconda/linux-64::perl-aceperl-1.92-pl526_2
perl-algorithm-di~ bioconda/linux-64::perl-algorithm-diff-1.1903-pl526_2
perl-algorithm-mu~ bioconda/linux-64::perl-algorithm-munkres-0.08-pl526_1
perl-apache-test bioconda/linux-64::perl-apache-test-1.40-pl526_1
perl-app-cpanminus bioconda/linux-64::perl-app-cpanminus-1.7044-pl526_1
perl-appconfig bioconda/linux-64::perl-appconfig-1.71-pl526_1
perl-array-compare bioconda/linux-64::perl-array-compare-3.0.1-pl526_1
perl-autoloader bioconda/linux-64::perl-autoloader-5.74-pl526_2
perl-base bioconda/linux-64::perl-base-2.23-pl526_1
perl-bio-asn1-ent~ bioconda/noarch::perl-bio-asn1-entrezgene-1.73-pl5262hdfd78af_2
perl-bio-coordina~ bioconda/noarch::perl-bio-coordinate-1.007001-pl5262hdfd78af_2
perl-bio-db-hts bioconda/linux-64::perl-bio-db-hts-3.01-pl5262h22771d5_3
perl-bio-featureio bioconda/noarch::perl-bio-featureio-1.6.905-pl5262hdfd78af_3
perl-bio-phylo bioconda/noarch::perl-bio-phylo-0.58-pl5262hdfd78af_3
perl-bio-samtools bioconda/linux-64::perl-bio-samtools-1.43-pl526h1341992_1
perl-bio-tools-ph~ bioconda/noarch::perl-bio-tools-phylo-paml-1.7.3-pl5262hdfd78af_2
perl-bio-tools-ru~ bioconda/noarch::perl-bio-tools-run-alignment-clustalw-1.7.4-pl5262hdfd78af_2
perl-bio-tools-ru~ bioconda/noarch::perl-bio-tools-run-alignment-tcoffee-1.7.4-pl5262hdfd78af_3
perl-bioperl bioconda/noarch::perl-bioperl-1.7.2-pl526_11
perl-bioperl-core bioconda/noarch::perl-bioperl-core-1.007002-pl5262hdfd78af_3
perl-bioperl-run bioconda/noarch::perl-bioperl-run-1.007002-pl5262hdfd78af_5
perl-business-isbn bioconda/linux-64::perl-business-isbn-3.004-pl526_0
perl-business-isb~ bioconda/linux-64::perl-business-isbn-data-20140910.003-pl526_0
perl-cache-cache bioconda/linux-64::perl-cache-cache-1.08-pl526_0
perl-capture-tiny bioconda/linux-64::perl-capture-tiny-0.48-pl526_0
perl-carp bioconda/linux-64::perl-carp-1.38-pl526_3
perl-cgi bioconda/linux-64::perl-cgi-4.44-pl526h14c3975_1
perl-class-data-i~ bioconda/linux-64::perl-class-data-inheritable-0.08-pl526_1
perl-class-inspec~ bioconda/linux-64::perl-class-inspector-1.34-pl526_0
perl-class-load bioconda/linux-64::perl-class-load-0.25-pl526_0
perl-class-load-xs bioconda/linux-64::perl-class-load-xs-0.10-pl526h6bb024c_2
perl-class-method~ bioconda/linux-64::perl-class-method-modifiers-2.12-pl526_0
perl-clone bioconda/linux-64::perl-clone-0.42-pl526h516909a_0
perl-common-sense bioconda/linux-64::perl-common-sense-3.74-pl526_2
perl-compress-raw~ bioconda/linux-64::perl-compress-raw-bzip2-2.087-pl526he1b5a44_0
perl-compress-raw~ bioconda/linux-64::perl-compress-raw-zlib-2.087-pl526hc9558a2_0
perl-constant bioconda/linux-64::perl-constant-1.33-pl526_1
perl-convert-bina~ bioconda/linux-64::perl-convert-binary-c-0.78-pl526h6bb024c_3
perl-convert-binh~ bioconda/linux-64::perl-convert-binhex-1.125-pl526_1
perl-crypt-rc4 bioconda/linux-64::perl-crypt-rc4-2.02-pl526_1
perl-data-dumper bioconda/linux-64::perl-data-dumper-2.173-pl526_0
perl-data-optlist bioconda/linux-64::perl-data-optlist-0.110-pl526_2
perl-data-stag bioconda/linux-64::perl-data-stag-0.14-pl526_1
perl-date-format bioconda/linux-64::perl-date-format-2.30-pl526_2
perl-db-file bioconda/linux-64::perl-db-file-1.855-pl526h516909a_0
perl-dbd-mysql bioconda/linux-64::perl-dbd-mysql-4.046-pl526h6bb024c_1
perl-dbd-sqlite bioconda/linux-64::perl-dbd-sqlite-1.64-pl526h516909a_0
perl-dbi bioconda/linux-64::perl-dbi-1.642-pl526_0
perl-devel-global~ bioconda/linux-64::perl-devel-globaldestruction-0.14-pl526_0
perl-devel-overlo~ bioconda/linux-64::perl-devel-overloadinfo-0.005-pl526_0
perl-devel-stackt~ bioconda/noarch::perl-devel-stacktrace-2.04-pl526_0
perl-digest-hmac bioconda/linux-64::perl-digest-hmac-1.03-pl526_3
perl-digest-md5 bioconda/linux-64::perl-digest-md5-2.55-pl526_0
perl-digest-perl-~ bioconda/linux-64::perl-digest-perl-md5-1.9-pl526_1
perl-digest-sha1 bioconda/linux-64::perl-digest-sha1-2.13-pl526h6bb024c_1
perl-dist-checkco~ bioconda/linux-64::perl-dist-checkconflicts-0.11-pl526_2
perl-dynaloader bioconda/linux-64::perl-dynaloader-1.25-pl526_1
perl-email-date-f~ bioconda/linux-64::perl-email-date-format-1.005-pl526_2
perl-encode bioconda/linux-64::perl-encode-2.88-pl526_1
perl-encode-locale bioconda/linux-64::perl-encode-locale-1.05-pl526_6
perl-error bioconda/linux-64::perl-error-0.17027-pl526_1
perl-eval-closure bioconda/linux-64::perl-eval-closure-0.14-pl526h6bb024c_4
perl-exception-cl~ bioconda/linux-64::perl-exception-class-1.44-pl526_0
perl-exporter bioconda/linux-64::perl-exporter-5.72-pl526_1
perl-exporter-tiny bioconda/linux-64::perl-exporter-tiny-1.002001-pl526_0
perl-extutils-mak~ bioconda/linux-64::perl-extutils-makemaker-7.36-pl526_1
perl-file-listing bioconda/linux-64::perl-file-listing-6.04-pl526_1
perl-file-path bioconda/linux-64::perl-file-path-2.16-pl526_0
perl-file-slurp-t~ bioconda/linux-64::perl-file-slurp-tiny-0.004-pl526_1
perl-file-sort bioconda/linux-64::perl-file-sort-1.01-pl526_2
perl-file-temp bioconda/linux-64::perl-file-temp-0.2304-pl526_2
perl-file-which bioconda/linux-64::perl-file-which-1.23-pl526_0
perl-font-afm bioconda/linux-64::perl-font-afm-1.20-pl526_2
perl-font-ttf bioconda/linux-64::perl-font-ttf-1.06-pl526_0
perl-gd bioconda/linux-64::perl-gd-2.68-pl526he941832_0
perl-getopt-long bioconda/linux-64::perl-getopt-long-2.50-pl526_1
perl-graph bioconda/linux-64::perl-graph-0.9704-pl526_1
perl-graphviz bioconda/linux-64::perl-graphviz-2.24-pl526h734ff71_0
perl-html-element~ bioconda/linux-64::perl-html-element-extended-1.18-pl526_1
perl-html-entitie~ bioconda/linux-64::perl-html-entities-numbered-0.04-pl526_1
perl-html-formatt~ bioconda/linux-64::perl-html-formatter-2.16-pl526_0
perl-html-parser bioconda/linux-64::perl-html-parser-3.72-pl526h6bb024c_5
perl-html-tableex~ bioconda/linux-64::perl-html-tableextract-2.13-pl526_2
perl-html-tagset bioconda/linux-64::perl-html-tagset-3.20-pl526_3
perl-html-tidy bioconda/linux-64::perl-html-tidy-1.60-pl526_0
perl-html-tree bioconda/linux-64::perl-html-tree-5.07-pl526_1
perl-html-treebui~ bioconda/linux-64::perl-html-treebuilder-xpath-0.14-pl526_1
perl-http-cookies bioconda/linux-64::perl-http-cookies-6.04-pl526_0
perl-http-daemon bioconda/linux-64::perl-http-daemon-6.01-pl526_1
perl-http-date bioconda/linux-64::perl-http-date-6.02-pl526_3
perl-http-message bioconda/linux-64::perl-http-message-6.18-pl526_0
perl-http-negotia~ bioconda/linux-64::perl-http-negotiate-6.01-pl526_3
perl-image-info bioconda/linux-64::perl-image-info-1.38-pl526_1
perl-image-size bioconda/linux-64::perl-image-size-3.300-pl526_2
perl-io-compress bioconda/linux-64::perl-io-compress-2.087-pl526he1b5a44_0
perl-io-html bioconda/linux-64::perl-io-html-1.001-pl526_2
perl-io-sessionda~ bioconda/linux-64::perl-io-sessiondata-1.03-pl526_1
perl-io-socket-ssl bioconda/linux-64::perl-io-socket-ssl-2.066-pl526_0
perl-io-string bioconda/linux-64::perl-io-string-1.08-pl526_3
perl-io-stringy bioconda/linux-64::perl-io-stringy-2.111-pl526_1
perl-io-tty bioconda/linux-64::perl-io-tty-1.12-pl526_1
perl-ipc-run bioconda/linux-64::perl-ipc-run-20180523.0-pl526_0
perl-ipc-sharelite bioconda/linux-64::perl-ipc-sharelite-0.17-pl526h6bb024c_1
perl-jcode bioconda/linux-64::perl-jcode-2.07-pl526_2
perl-json bioconda/linux-64::perl-json-4.02-pl526_0
perl-json-xs bioconda/linux-64::perl-json-xs-2.34-pl526h6bb024c_3
perl-lib bioconda/linux-64::perl-lib-0.63-pl526_1
perl-libwww-perl bioconda/noarch::perl-libwww-perl-6.39-pl526_0
perl-libxml-perl bioconda/linux-64::perl-libxml-perl-0.08-pl526_2
perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-0.428-pl526_1
perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.428-pl526_0
perl-lwp-mediatyp~ bioconda/linux-64::perl-lwp-mediatypes-6.04-pl526_0
perl-lwp-protocol~ bioconda/linux-64::perl-lwp-protocol-https-6.07-pl526_4
perl-lwp-simple bioconda/linux-64::perl-lwp-simple-6.15-pl526h470a237_4
perl-mailtools bioconda/noarch::perl-mailtools-2.21-pl526_0
perl-math-cdf bioconda/linux-64::perl-math-cdf-0.1-pl526h14c3975_5
perl-math-derivat~ bioconda/linux-64::perl-math-derivative-1.01-pl526_0
perl-math-random bioconda/linux-64::perl-math-random-0.72-pl526h14c3975_2
perl-math-spline bioconda/linux-64::perl-math-spline-0.02-pl526_2
perl-mime-base64 bioconda/linux-64::perl-mime-base64-3.15-pl526_1
perl-mime-lite bioconda/linux-64::perl-mime-lite-3.030-pl526_1
perl-mime-tools bioconda/linux-64::perl-mime-tools-5.508-pl526_1
perl-mime-types bioconda/linux-64::perl-mime-types-2.17-pl526_0
perl-mldbm bioconda/linux-64::perl-mldbm-2.05-pl526_1
perl-module-imple~ bioconda/linux-64::perl-module-implementation-0.09-pl526_2
perl-module-runti~ bioconda/linux-64::perl-module-runtime-0.016-pl526_1
perl-module-runti~ bioconda/linux-64::perl-module-runtime-conflicts-0.003-pl526_0
perl-moo bioconda/linux-64::perl-moo-2.003004-pl526_0
perl-moose bioconda/linux-64::perl-moose-2.2011-pl526hf484d3e_1
perl-mozilla-ca bioconda/linux-64::perl-mozilla-ca-20180117-pl526_1
perl-mro-compat bioconda/linux-64::perl-mro-compat-0.13-pl526_0
perl-net-http bioconda/noarch::perl-net-http-6.19-pl526_0
perl-net-ssleay bioconda/linux-64::perl-net-ssleay-1.88-pl526h90d6eec_0
perl-ntlm bioconda/linux-64::perl-ntlm-1.09-pl526_4
perl-ole-storage_~ bioconda/linux-64::perl-ole-storage_lite-0.19-pl526_3
perl-package-depr~ bioconda/linux-64::perl-package-deprecationmanager-0.17-pl526_0
perl-package-stash bioconda/linux-64::perl-package-stash-0.38-pl526hf484d3e_1
perl-package-stas~ bioconda/linux-64::perl-package-stash-xs-0.28-pl526hf484d3e_1
perl-params-util bioconda/linux-64::perl-params-util-1.07-pl526h6bb024c_4
perl-parent bioconda/linux-64::perl-parent-0.236-pl526_1
perl-parse-recdes~ bioconda/linux-64::perl-parse-recdescent-1.967015-pl526_0
perl-pathtools bioconda/linux-64::perl-pathtools-3.75-pl526h14c3975_1
perl-pdf-api2 bioconda/noarch::perl-pdf-api2-2.035-pl526_0
perl-perlio-gzip bioconda/linux-64::perl-perlio-gzip-0.20-pl526h84994c4_1
perl-pod-escapes bioconda/linux-64::perl-pod-escapes-1.07-pl526_1
perl-pod-usage bioconda/linux-64::perl-pod-usage-1.69-pl526_1
perl-postscript bioconda/linux-64::perl-postscript-0.06-pl526_2
perl-role-tiny bioconda/noarch::perl-role-tiny-2.000008-pl526_0
perl-scalar-list-~ bioconda/linux-64::perl-scalar-list-utils-1.52-pl526h516909a_0
perl-sereal bioconda/noarch::perl-sereal-4.007-pl526_0
perl-sereal-decod~ bioconda/linux-64::perl-sereal-decoder-4.007-pl526h14c3975_0
perl-sereal-encod~ bioconda/linux-64::perl-sereal-encoder-4.007-pl526h14c3975_0
perl-set-interval~ bioconda/linux-64::perl-set-intervaltree-0.12-pl526he1b5a44_0
perl-set-scalar bioconda/linux-64::perl-set-scalar-1.29-pl526_2
perl-soap-lite bioconda/linux-64::perl-soap-lite-1.19-pl526_1
perl-socket bioconda/linux-64::perl-socket-2.027-pl526_1
perl-sort-natural~ bioconda/linux-64::perl-sort-naturally-1.03-pl526_2
perl-spreadsheet-~ bioconda/linux-64::perl-spreadsheet-parseexcel-0.65-pl526_2
perl-spreadsheet-~ bioconda/linux-64::perl-spreadsheet-writeexcel-2.40-pl526_2
perl-statistics-d~ bioconda/linux-64::perl-statistics-descriptive-3.0702-pl526_0
perl-storable bioconda/linux-64::perl-storable-3.15-pl526h14c3975_0
perl-sub-exporter bioconda/linux-64::perl-sub-exporter-0.987-pl526_2
perl-sub-exporter~ bioconda/linux-64::perl-sub-exporter-progressive-0.001013-pl526_0
perl-sub-identify bioconda/linux-64::perl-sub-identify-0.14-pl526h14c3975_0
perl-sub-install bioconda/linux-64::perl-sub-install-0.928-pl526_2
perl-sub-name bioconda/linux-64::perl-sub-name-0.21-pl526_1
perl-sub-quote bioconda/linux-64::perl-sub-quote-2.006003-pl526_1
perl-sub-uplevel bioconda/linux-64::perl-sub-uplevel-0.2800-pl526h14c3975_2
perl-svg bioconda/linux-64::perl-svg-2.84-pl526_0
perl-svg-graph bioconda/linux-64::perl-svg-graph-0.02-pl526_3
perl-task-weaken bioconda/linux-64::perl-task-weaken-1.06-pl526_0
perl-template-too~ bioconda/linux-64::perl-template-toolkit-2.26-pl526_1
perl-test bioconda/linux-64::perl-test-1.26-pl526_1
perl-test-deep bioconda/linux-64::perl-test-deep-1.128-pl526_1
perl-test-differe~ bioconda/noarch::perl-test-differences-0.67-pl526_0
perl-test-excepti~ bioconda/linux-64::perl-test-exception-0.43-pl526_2
perl-test-harness bioconda/linux-64::perl-test-harness-3.42-pl526_0
perl-test-leaktra~ bioconda/linux-64::perl-test-leaktrace-0.16-pl526h14c3975_2
perl-test-most bioconda/linux-64::perl-test-most-0.35-pl526_0
perl-test-require~ bioconda/linux-64::perl-test-requiresinternet-0.05-pl526_0
perl-test-warn bioconda/linux-64::perl-test-warn-0.36-pl526_1
perl-text-csv bioconda/noarch::perl-text-csv-2.00-pl526_0
perl-text-diff bioconda/linux-64::perl-text-diff-1.45-pl526_0
perl-tie-ixhash bioconda/linux-64::perl-tie-ixhash-1.23-pl526_2
perl-time-hires bioconda/linux-64::perl-time-hires-1.9760-pl526h14c3975_1
perl-time-local bioconda/linux-64::perl-time-local-1.28-pl526_1
perl-timedate bioconda/linux-64::perl-timedate-2.30-pl526_1
perl-tree-dag_node bioconda/linux-64::perl-tree-dag_node-1.31-pl526_0
perl-try-tiny bioconda/linux-64::perl-try-tiny-0.30-pl526_1
perl-type-tiny bioconda/linux-64::perl-type-tiny-1.004004-pl526_0
perl-types-serial~ bioconda/linux-64::perl-types-serialiser-1.0-pl526_2
perl-unicode-map bioconda/linux-64::perl-unicode-map-0.112-pl526h6bb024c_3
perl-uri bioconda/linux-64::perl-uri-1.76-pl526_0
perl-www-robotrul~ bioconda/linux-64::perl-www-robotrules-6.02-pl526_3
perl-xml-dom bioconda/linux-64::perl-xml-dom-1.46-pl526_0
perl-xml-dom-xpath bioconda/linux-64::perl-xml-dom-xpath-0.14-pl526_1
perl-xml-filter-b~ bioconda/linux-64::perl-xml-filter-buffertext-1.01-pl526_2
perl-xml-libxml bioconda/linux-64::perl-xml-libxml-2.0132-pl526h7ec2d77_1
perl-xml-libxslt bioconda/linux-64::perl-xml-libxslt-1.94-pl526_1
perl-xml-namespac~ bioconda/linux-64::perl-xml-namespacesupport-1.12-pl526_0
perl-xml-parser conda-forge/linux-64::perl-xml-parser-2.44_01-pl5262hc3e0081_1002
perl-xml-regexp bioconda/linux-64::perl-xml-regexp-0.04-pl526_2
perl-xml-sax bioconda/noarch::perl-xml-sax-1.02-pl526_0
perl-xml-sax-base bioconda/linux-64::perl-xml-sax-base-1.09-pl526_0
perl-xml-sax-expat bioconda/linux-64::perl-xml-sax-expat-0.51-pl526_3
perl-xml-sax-writ~ bioconda/linux-64::perl-xml-sax-writer-0.57-pl526_0
perl-xml-simple bioconda/linux-64::perl-xml-simple-2.25-pl526_1
perl-xml-twig bioconda/linux-64::perl-xml-twig-3.52-pl526_2
perl-xml-writer bioconda/linux-64::perl-xml-writer-0.625-pl526_2
perl-xml-xpath bioconda/linux-64::perl-xml-xpath-1.44-pl526_0
perl-xml-xpatheng~ bioconda/linux-64::perl-xml-xpathengine-0.14-pl526_2
perl-xsloader bioconda/linux-64::perl-xsloader-0.24-pl526_0
perl-yaml bioconda/noarch::perl-yaml-1.29-pl526_0
pip conda-forge/noarch::pip-22.0.2-pyhd8ed1ab_0
pixman conda-forge/linux-64::pixman-0.40.0-h36c2ea0_0
pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001
python conda-forge/linux-64::python-3.7.12-hb7a2778_100_cpython
python_abi conda-forge/linux-64::python_abi-3.7-2_cp37m
readline conda-forge/linux-64::readline-8.1-h46c0cb4_0
setuptools conda-forge/linux-64::setuptools-60.6.0-py37h89c1867_0
sqlite conda-forge/linux-64::sqlite-3.37.0-h9cd32fc_0
t_coffee bioconda/linux-64::t_coffee-11.0.8-py37hea885bf_8
tidyp bioconda/linux-64::tidyp-1.04-h779adbc_3
tk conda-forge/linux-64::tk-8.6.11-h27826a3_1
unzip conda-forge/linux-64::unzip-6.0-h7f98852_2
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xorg-kbproto conda-forge/linux-64::xorg-kbproto-1.0.7-h7f98852_1002
xorg-libice conda-forge/linux-64::xorg-libice-1.0.10-h7f98852_0
xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.3-hd9c2040_1000
xorg-libx11 conda-forge/linux-64::xorg-libx11-1.7.2-h7f98852_0
xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.9-h7f98852_0
xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0
xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.4-h7f98852_1
xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.10-h7f98852_1003
xorg-renderproto conda-forge/linux-64::xorg-renderproto-0.11.1-h7f98852_1002
xorg-xextproto conda-forge/linux-64::xorg-xextproto-7.3.0-h7f98852_1002
xorg-xproto conda-forge/linux-64::xorg-xproto-7.0.31-h7f98852_1007
xz conda-forge/linux-64::xz-5.2.5-h516909a_1
zlib conda-forge/linux-64::zlib-1.2.11-h36c2ea0_1013
zstd conda-forge/linux-64::zstd-1.5.2-ha95c52a_0
Proceed ([y]/n)?
With more complex Dockerfiles, I've seen some other issues related to perl-bioperl>=1.7.2 and t_coffee vs t-coffee needing a Python < 3.8 and >= 3.7 (default is 3.8.5).
@alanhoyle this part at least should now be resolved. (#32576)
Thanks for letting me know @0xaf1f.
I tested this with a simplified Dockerfile that uses micromamba
instead of conda
, and was able to get it to build:
FROM mambaorg/micromamba:latest
RUN micromamba install -n base -c conda-forge -c bioconda -c defaults ensembl-vep=103.1
I'm trying to install ensembl-vep=103.1 into a Docker image. I'd like to be using
continuumio/miniconda3
to stay future-proof with Python3, but if I do that, it won't work.If I run
docker build
on this I get the following error:However, if I change to
continuumio/miniconda
(i.e. the older Python2 version) it works.With more complex Dockerfiles, I've seen some other issues related to
perl-bioperl>=1.7.2
andt_coffee
vst-coffee
needing a Python < 3.8 and >= 3.7 (default is 3.8.5). (see #20459 for more examples of that)