search

bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
1.65k stars 3.28k forks source link

Cannot install RepeatMasker #43589

Closed sofya-d closed 1 year ago

sofya-d commented 1 year ago

I cannot install RepeatMasker via conda. I used commands from this web page. Commands, stdout and stderr are listed below.

(base) me@server:~/dir$ conda activate RepeatMasker
(RepeatMasker) me@server:~/dir$ conda install -c bioconda repeatmasker
Collecting package metadata (current_repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Solving environment: unsuccessful attempt using repodata from current_repodata.json, retrying with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Solving environment: / 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                                                                            

UnsatisfiableError: 

(RepeatMasker) me@server:~/dir$ conda install -c "bioconda/label/cf201901" repeatmasker
Collecting package metadata (current_repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Solving environment: unsuccessful attempt using repodata from current_repodata.json, retrying with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Solving environment: | 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                                                                            

UnsatisfiableError:
sofya-d commented 1 year ago

I run

mamba install -c conda-forge -c bioconda repeatmasker

and everything installed. I guess the same command with 'conda' instead of 'mamba' would suffice.