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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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strainy req update #51663

Closed katerinakazantseva closed 6 days ago

katerinakazantseva commented 6 days ago

Describe your pull request here

Please read the guidelines for Bioconda recipes before opening a pull request (PR).

General instructions

Instructions for avoiding API, ABI, and CLI breakage issues

Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes. This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe. If not already present in the meta.yaml, make sure to specify run_exports (see here for the rationale and comprehensive explanation). Add a run_exports section like this:

build:
  run_exports:
    - ...

with ... being one of:

Case run_exports statement
semantic versioning {{ pin_subpackage("myrecipe", max_pin="x") }}
semantic versioning (0.x.x) {{ pin_subpackage("myrecipe", max_pin="x.x") }}
known breakage in minor versions {{ pin_subpackage("myrecipe", max_pin="x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
known breakage in patch versions {{ pin_subpackage("myrecipe", max_pin="x.x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
calendar versioning {{ pin_subpackage("myrecipe", max_pin=None) }}

while replacing "myrecipe" with either name if a name|lower variable is defined in your recipe or with the lowercase name of the package in quotes.

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@BiocondaBot please update Merge the master branch into a PR.
@BiocondaBot please add label Add the please review & merge label.
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Note that the @BiocondaBot please merge command is now depreciated. Please just squash and merge instead. Also, the bot watches for comments from non-members that include `@bioconda/` and will automatically re-post them to notify the addressed ``.
coderabbitai[bot] commented 6 days ago
📝 Walkthrough
📝 Walkthrough ## Walkthrough The pull request introduces modifications to the `meta.yaml` file for the `strainy` package. The build number has been incremented from 0 to 1, indicating a new build iteration. The `script` command in the `build` section has been updated to include additional flags: `--no-deps`, `--no-build-isolation`, and `--no-cache-dir`. An `entry_points` section has been added, specifying that the `strainy` command should point to `strainy.main:main`. In the `requirements` section, the Python version requirement has been updated to `python >=3.8`, and `pip` and `setuptools` have been added as dependencies. The `minimap2` requirement has been modified to specify a minimum version of `2.28`. The summary in the `about` section has been updated to include a period at the end of the sentence. The overall structure of the file remains consistent, with no changes to the commands or the overall organization of the sections. ## Possibly related PRs - **#51524**: This PR updates the `meta.yaml` file for the `strainy` package, which is directly related to the changes made in the main PR that also modifies the `meta.yaml` for the same package. Both PRs involve updates to the version number and build number, as well as changes to the summary text. ## Suggested labels `please review & merge` ## Suggested reviewers - martin-g - adamhospital
📜 Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
📥 Commits Files that changed from the base of the PR and between 4c97a972368772c59f0a3038f3a312c4dca68c03 and 1bae2736095b10a7b89c3ce2a7ff08aa96c17d60.
📒 Files selected for processing (1) * recipes/strainy/meta.yaml (2 hunks)
🚧 Files skipped from review as they are similar to previous changes (1) * recipes/strainy/meta.yaml
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