bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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Update haystac to 0.4.12 #51668

Closed BiocondaBot closed 6 days ago

BiocondaBot commented 6 days ago

Update haystac: 0.4.110.4.12

install with bioconda Conda

Info Link or Description
Recipe recipes/haystac (click to view/edit other files)
Summary Species identification pipeline for both single species and metagenomic samples.
Home https://github.com/antonisdim/haystac
Releases https://pypi.org/pypi/haystac/json
Recipe Maintainer(s) @antonisdim

This pull request was automatically generated (see docs).

antonisdim commented 6 days ago

please ignore this automated PR in favour of https://github.com/bioconda/bioconda-recipes/pull/51666

coderabbitai[bot] commented 6 days ago
📝 Walkthrough ## Walkthrough This pull request introduces an update to the `meta.yaml` file for the `haystac` package. The primary changes include the version number, which has been incremented from `0.4.11` to `0.4.12`. In addition, the SHA256 checksum associated with the source tarball has been modified from `77727ce69b8df4211c43b424a292cd703987946e889a370337ce4afc7b6f0edd` to `65f87603cb278f69003b8eea1f78d255d37b3c8dcb0f0c9ac71f8a85038c50e2`. No other alterations to the file's structure, dependencies, or additional sections have been made. These changes are solely focused on updating the version and checksum to reflect the new release of the package. ## Possibly related PRs - #51652: The changes in this PR involve updating the version and SHA256 checksum in the `meta.yaml` file for the `pydeseq2` package, similar to the version and checksum updates in the `haystac` package's `meta.yaml` file in the main PR.

📜 Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
📥 Commits Files that changed from the base of the PR and between e455067ecab10d36985f9c5ca6950a3ca36358fb and 5a42ba10f02affc7759287be7a7da8de770d17fc.
📒 Files selected for processing (1) * recipes/haystac/meta.yaml (1 hunks)
🔇 Additional comments (3)
recipes/haystac/meta.yaml (3)
`2-2`: **LGTM: Version bump follows semantic versioning** The version update from 0.4.11 to 0.4.12 follows proper semantic versioning format. --- Line range hint `29-37`: **Consider using more flexible version constraints** The run dependencies have exact version pins (e.g., `numpy =2.0.0`, `python =3.9.19`). While this ensures reproducibility, it might be too restrictive and could cause conflicts with other packages. Consider using more flexible version constraints (e.g., `>=`) unless these exact versions are absolutely required. ```shell #!/bin/bash # Description: Check if these exact versions are required by searching for version-related issues # Search for version-related issues in the upstream repository gh issue list -R antonisdim/haystac -S "in:title,body numpy python pandas version" ```
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token (syntax)
--- `10-10`: **Verify SHA256 checksum against PyPI source** Let's verify that the SHA256 checksum matches the source tarball from PyPI.
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mergify[bot] commented 6 days ago

⚠️ The sha of the head commit of this PR conflicts with #51681. Mergify cannot evaluate rules on this PR. ⚠️