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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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Update zol to 1.5.0 #51673

Closed BiocondaBot closed 6 days ago

BiocondaBot commented 6 days ago

Update zol: 1.4.12 → 1.5.0

install with bioconda Conda

Info Link or Description
Recipe recipes/zol (click to view/edit other files)
Summary zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters.
Home https://github.com/Kalan-Lab/zol
Releases https://github.com/Kalan-Lab/zol/tags
Recipe Maintainer(s) @raufs
Author @Kalan-Lab

This pull request was automatically generated (see docs).

coderabbitai[bot] commented 6 days ago
📝 Walkthrough
📝 Walkthrough ## Walkthrough The pull request introduces an update to the `meta.yaml` file for the `zol` package. The version number is incremented from `1.4.12` to `1.5.0`, indicating a new release. Alongside this version change, the source URL has been modified to point to the new version's tarball located at `https://github.com/Kalan-Lab/zol/archive/refs/tags/v1.5.0.tar.gz`. Additionally, the SHA256 checksum has been updated to `e1d0d090a08a26d2ecbb958d398dc47df94ffbaa034265086c7084d1e88cfb2d` to ensure integrity verification for the new version's source archive. Two new dependencies, `gravis` and `colour`, have been added to the `run` requirements section. No other modifications were made to the structure or content of the `meta.yaml` file. The `build.sh` script has also been modified to change the compilation commands for C++ programs, incorporating the `-Wl,-headerpad_max_install_names` linker flag. The output binaries are now directly placed in the `${PREFIX}/bin` directory during compilation. An empty `export LDFLAGS=` line has been added, and the script ensures that the newly compiled binaries have executable permissions set using `chmod +x`. The rest of the script continues to manage directory setups for database downloads and environment variable configurations. ## Possibly related PRs - #51017: Updates the version and SHA256 checksum in the `meta.yaml` file for the `trgt` package. - #51060: Involves a version update and SHA256 checksum change in the `meta.yaml` file for the `olivar` package. - #51189: Updates the version and SHA256 checksum in the `panaroo` package's `meta.yaml`. - #51455: Updates the version and SHA256 checksum for the `biobb_cmip` package's `meta.yaml`. - #51507: Updates the version and SHA256 checksum in the `centrifuge` package's `meta.yaml`. - #51524: Updates the version and SHA256 checksum in the `strainy` package's `meta.yaml`. - #51540: Updates the version and SHA256 checksum in the `cosigt` package's `meta.yaml`. - #51544: Updates the version and hash in the `rosella` package's `meta.yaml`. - #51549: Updates the version and SHA256 checksum for the `pybiolib` package. - #51601: Updates the version and SHA256 checksum in the `biobb_dna` package's `meta.yaml`. - #51660: Updates the version and SHA256 checksum for the `pybiolib` package. - #51667: Similar updates to the version and SHA256 checksum in the `pybiolib` package.

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