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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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Update cgat-apps to 0.7.4 #51682

Open BiocondaBot opened 5 days ago

BiocondaBot commented 5 days ago

Update cgat-apps: 0.7.2 → 0.7.4

install with bioconda Conda

Info Link or Description
Recipe recipes/cgat-apps (click to view/edit other files)
Summary Computational Genomics Analysis Toolkit
Home https://github.com/cgat-developers/cgat-apps
Releases

This pull request was automatically generated (see docs).

coderabbitai[bot] commented 5 days ago
📝 Walkthrough
📝 Walkthrough ## Walkthrough The pull request involves updates to the `meta.yaml` file for the `cgat-apps` package. The version number has been incremented from `0.7.2` to `0.7.4`, and the source URL has been adjusted to link to the new version's tarball. The SHA256 checksum has been updated to ensure the integrity of the new version. Additionally, the build number has been reset from `2` to `0`, indicating a new build cycle. The `skip` directive remains unchanged, still set to true for Python version `312`. The host requirements have been modified, with `cython` being replaced by `pip`, and `cython` now specified with a version constraint (`>=0.29.35`). The `htslib` dependency has been removed from the `run` section. Updates to the `about` section include changing the `home` URL to the GitHub repository and adding new fields for `license_family`, `dev_url`, and `doc_url`. The `build.sh` script has been modified to enhance compiler flags and change the installation method to utilize `pip`. Two build failure files for `linux-64` and `osx-64` have been deleted, which documented previous dependency issues. ## Possibly related PRs - **#50881**: Involves updates to the `meta.yaml` file for the `hictk` package, including versioning and dependency adjustments. - **#51067**: Similar updates in the `meta.yaml` file for `bambamc`, focusing on versioning and dependency modifications. - **#51121**: Changes in the `meta.yaml` file for `longreadsum`, including version updates and dependency modifications. - **#51206**: Updates to the `meta.yaml` file for `pepnovo`, involving version and dependency changes. - **#51221**: Modifications in the `meta.yaml` file for `breseq`, which include version updates and dependency adjustments. - **#51519**: Changes to the `meta.yaml` file for `svdss`, focusing on version updates and dependency modifications. - **#51562**: Similar updates in the `meta.yaml` file for `pggb`, including version updates and dependency changes. - **#51620**: Involves updates to the `meta.yaml` file for `pggb`, focusing on version and dependency adjustments.

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