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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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Update annembed v0.1.7 #51696

Closed jianshu93 closed 3 days ago

jianshu93 commented 4 days ago

Describe your pull request here

Update to annembed 0.1.7, new subcommand hnsw to specify graph building parameters. New command line interface

Please read the guidelines for Bioconda recipes before opening a pull request (PR).

General instructions

Instructions for avoiding API, ABI, and CLI breakage issues

Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes. This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe. If not already present in the meta.yaml, make sure to specify run_exports (see here for the rationale and comprehensive explanation). Add a run_exports section like this:

build:
  run_exports:
    - ...

with ... being one of:

Case run_exports statement
semantic versioning {{ pin_subpackage("myrecipe", max_pin="x") }}
semantic versioning (0.x.x) {{ pin_subpackage("myrecipe", max_pin="x.x") }}
known breakage in minor versions {{ pin_subpackage("myrecipe", max_pin="x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
known breakage in patch versions {{ pin_subpackage("myrecipe", max_pin="x.x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
calendar versioning {{ pin_subpackage("myrecipe", max_pin=None) }}

while replacing "myrecipe" with either name if a name|lower variable is defined in your recipe or with the lowercase name of the package in quotes.

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coderabbitai[bot] commented 4 days ago
📝 Walkthrough
📝 Walkthrough
📝 Walkthrough
📝 Walkthrough ## Walkthrough The pull request involves an update to the `meta.yaml` file for the `annembed` package. The version number has been changed from "0.1.6" to "0.1.7". Consequently, the source URL has been updated to reflect this new version, changing from `v0.1.6` to `v0.1.7`. Additionally, the SHA256 checksum associated with the source archive has been modified from `f60dceb94df46ae2ccc7ed228988a67df254a28f02b9b545baf31ca6e85f7f8d` to `487119295d6b42a1e5785172a211658749534102532ab15488357ce37291d88c`. No other modifications were made to the structure or content of the `meta.yaml` file. ## Possibly related PRs - **#51237**: Updates the `mgnify-pipelines-toolkit` package's `meta.yaml` file, incrementing the version from `0.1.6` to `0.1.7`. - **#51465**: Updates the `annembed` package's `meta.yaml` file, changing the version from `0.1.4` to `0.1.5`. - **#51538**: Updates the `annembed` package's `meta.yaml` file, changing the version from `0.1.5` to `0.1.6`. - **#51540**: Updates the `cosigt` package's `meta.yaml` file, incrementing the version from `0.1.2` to `0.1.3`. ## Suggested labels `autobump`, `new version`, `please review & merge` ## Suggested reviewers - mencian

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jianshu93 commented 4 days ago

@BiocondaBot please add label

jianshu93 commented 4 days ago

Dear bioconda team,

It seems linux build check did not run automatically, but I can make sure it builds. Can you please merge?

Thanks, Jianshu

jianshu93 commented 4 days ago

@BiocondaBot please fetch artifacts

BiocondaBot commented 4 days ago

No artifacts found on the most recent builds. Either the builds failed, the artifacts have been removed due to age, or the recipe was blacklisted/skipped.

mencian commented 3 days ago

There are no changes in this PR.

mencian commented 3 days ago

Closing in favor of #51695.