search

bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
1.64k stars 3.27k forks source link

GenEra Conda Recipes Submission #51721

Open AnupamGautam opened 3 days ago

AnupamGautam commented 3 days ago

Dear Administrator,

Please find attached the Conda recipes for GenEra. Let us know if any further modifications are required. We look forward to your feedback.

Best regards, Anupam

coderabbitai[bot] commented 3 days ago
📝 Walkthrough
📝 Walkthrough ## Walkthrough This pull request introduces two significant components for the `genera` package. First, a new script named `build.sh` is added to automate the installation of various executables related to the project. The script ensures that key scripts are made executable, clones a secondary repository (`abSENSE`), and moves its executable script into the current directory. It also establishes a Conda binary path for the executables. Second, a `meta.yaml` file is created for the `genera` package, version `1.4.2`, containing essential metadata such as the source repository URL, versioning, SHA256 checksum for integrity, and build number. This file outlines the required dependencies for both host and runtime environments, which include specific Python and R packages, as well as other necessary tools for the package's functionality. The `meta.yaml` also provides additional information, including the package's homepage and license type. ## Possibly related PRs - **#50969**: Introduces a new installation script for the `consensify` package, similar to the `build.sh` script added for `genera`. - **#50983**: Includes a `build.sh` script that modifies permissions and installs executables, related to the `genera` PR's focus on making executables executable. - **#51033**: The `build.sh` script for `sizemeup` automates the installation process, reflecting the approach in the `genera` PR. - **#51287**: Introduces a `build.sh` script for `gfainject`, paralleling the automation focus of the `genera` PR. - **#51326**: The `meta.yaml` file in this PR includes a `run_exports` section, similar to the main PR's `meta.yaml`, which specifies dependencies and package metadata. - **#51328**: Introduces a `meta.yaml` file that includes a `run_exports` section, akin to the main PR's focus on package configuration and dependencies. - **#51476**: Automates installation in the `gene-trajectory-python` package, similar to the `genera` PR's focus. - **#51488**: The `build.sh` script for `genodsp` reflects the automation theme present in the `genera` PR. - **#51632**: Automates the installation of a Rust package in `ggcat`, paralleling the automation seen in `genera`. - **#51665**: The `build.sh` script for `svtopo` automates installation, consistent with the theme in the `genera` PR. - **#51706**: This PR's addition of a `build.sh` script and `meta.yaml` for package configuration aligns with the main PR's objectives of automating installation processes. ## Suggested labels `please review & merge` ## Suggested reviewers - mencian

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share - [X](https://twitter.com/intent/tweet?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A&url=https%3A//coderabbit.ai) - [Mastodon](https://mastodon.social/share?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A%20https%3A%2F%2Fcoderabbit.ai) - [Reddit](https://www.reddit.com/submit?title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&text=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code.%20Check%20it%20out%3A%20https%3A//coderabbit.ai) - [LinkedIn](https://www.linkedin.com/sharing/share-offsite/?url=https%3A%2F%2Fcoderabbit.ai&mini=true&title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&summary=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code)
🪧 Tips ### Chat There are 3 ways to chat with [CodeRabbit](https://coderabbit.ai): - Review comments: Directly reply to a review comment made by CodeRabbit. Example: - `I pushed a fix in commit , please review it.` - `Generate unit testing code for this file.` - `Open a follow-up GitHub issue for this discussion.` - Files and specific lines of code (under the "Files changed" tab): Tag `@coderabbitai` in a new review comment at the desired location with your query. Examples: - `@coderabbitai generate unit testing code for this file.` - `@coderabbitai modularize this function.` - PR comments: Tag `@coderabbitai` in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples: - `@coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.` - `@coderabbitai read src/utils.ts and generate unit testing code.` - `@coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.` - `@coderabbitai help me debug CodeRabbit configuration file.` Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. ### CodeRabbit Commands (Invoked using PR comments) - `@coderabbitai pause` to pause the reviews on a PR. - `@coderabbitai resume` to resume the paused reviews. - `@coderabbitai review` to trigger an incremental review. This is useful when automatic reviews are disabled for the repository. - `@coderabbitai full review` to do a full review from scratch and review all the files again. - `@coderabbitai summary` to regenerate the summary of the PR. - `@coderabbitai resolve` resolve all the CodeRabbit review comments. - `@coderabbitai configuration` to show the current CodeRabbit configuration for the repository. - `@coderabbitai help` to get help. ### Other keywords and placeholders - Add `@coderabbitai ignore` anywhere in the PR description to prevent this PR from being reviewed. - Add `@coderabbitai summary` to generate the high-level summary at a specific location in the PR description. - Add `@coderabbitai` anywhere in the PR title to generate the title automatically. ### CodeRabbit Configuration File (`.coderabbit.yaml`) - You can programmatically configure CodeRabbit by adding a `.coderabbit.yaml` file to the root of your repository. - Please see the [configuration documentation](https://docs.coderabbit.ai/guides/configure-coderabbit) for more information. - If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: `# yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json` ### Documentation and Community - Visit our [Documentation](https://coderabbit.ai/docs) for detailed information on how to use CodeRabbit. - Join our [Discord Community](http://discord.gg/coderabbit) to get help, request features, and share feedback. - Follow us on [X/Twitter](https://twitter.com/coderabbitai) for updates and announcements.