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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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Update isoseq to 4.2.0 #51725

Closed BiocondaBot closed 3 days ago

BiocondaBot commented 3 days ago

Update isoseq: 4.0.0 → 4.2.0

install with bioconda Conda

Info Link or Description
Recipe recipes/isoseq (click to view/edit other files)
Summary Iso-Seq - Scalable De Novo Isoform Discovery
Home https://github.com/PacificBiosciences/pbbioconda
Releases []()
Recipe Maintainer(s) @armintoepfer, @pb-dseifert
Author @PacificBiosciences

This pull request was automatically generated (see docs).

coderabbitai[bot] commented 3 days ago
📝 Walkthrough ## Walkthrough The pull request involves modifications to the `meta.yaml` file of the `isoseq` package. The primary changes include an update to the version number from "4.0.0" to "4.2.0", indicating a new release of the package. Alongside this version increment, the SHA256 checksum has been updated from "5766001507cf2a351b260cf38b717351dd676a7c87eb7c285c3c43a4a458f4b2" to "e22ee0cd508129455486d1d54aeef3df53cabf8cc419fd4c2bd5a1fc4ea514c0" to ensure the integrity of the new package version. All other components of the `meta.yaml` file, including the package name, source URL, build configuration, test commands, and additional metadata, remain unchanged. ## Possibly related PRs - #51172: This PR updates the `meta.yaml` file for the `qtlseq` package, changing the version and SHA256 checksum, similar to the version and checksum updates in the main PR for the `isoseq` package. - #51583: This PR updates the `meta.yaml` file for the `iSeq` package, including changes to the version and SHA256 checksum, paralleling the updates made in the main PR for the `isoseq` package. - #51584: This PR also updates the `meta.yaml` file for the `iSeq` package, with similar changes to the version and SHA256 checksum as seen in the main PR for the `isoseq` package.
📜 Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
📥 Commits Files that changed from the base of the PR and between 9a03cf0abc28c06c98c02bb5c36e30ac044b79db and 6cba6ca51efe408af5cf038485b17b4dd8848faf.
📒 Files selected for processing (1) * recipes/isoseq/meta.yaml (1 hunks)
🔇 Additional comments (2)
recipes/isoseq/meta.yaml (2)
Line range hint `1-35`: **Recipe structure and metadata are well-maintained.** The recipe follows bioconda best practices with proper templating, metadata, and configuration. The build number has been correctly reset to 0 for the new version.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token (syntax)
--- `2-3`: **Version bump looks correct.** The version update to 4.2.0 and corresponding SHA256 update align with the PR objectives. Let's verify the SHA256 checksum matches the actual release binary:
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