bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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Update isoseq version 4.2.0 #51727

Closed jmattick closed 3 days ago

jmattick commented 3 days ago

Update isoseq version 4.2.0

Please read the guidelines for Bioconda recipes before opening a pull request (PR).

General instructions

Instructions for avoiding API, ABI, and CLI breakage issues

Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes. This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe. If not already present in the meta.yaml, make sure to specify run_exports (see here for the rationale and comprehensive explanation). Add a run_exports section like this:

build:
  run_exports:
    - ...

with ... being one of:

Case run_exports statement
semantic versioning {{ pin_subpackage("myrecipe", max_pin="x") }}
semantic versioning (0.x.x) {{ pin_subpackage("myrecipe", max_pin="x.x") }}
known breakage in minor versions {{ pin_subpackage("myrecipe", max_pin="x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
known breakage in patch versions {{ pin_subpackage("myrecipe", max_pin="x.x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
calendar versioning {{ pin_subpackage("myrecipe", max_pin=None) }}

while replacing "myrecipe" with either name if a name|lower variable is defined in your recipe or with the lowercase name of the package in quotes.

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coderabbitai[bot] commented 3 days ago
📝 Walkthrough
📝 Walkthrough ## Walkthrough The pull request modifies the `meta.yaml` file for the `isoseq` package. It updates the package version from `4.0.0` to `4.2.0` and changes the SHA256 checksum to reflect this new version. Additionally, the `build` section of the `meta.yaml` file is enhanced with two new entries: `binary_relocation` is set to `False`, and a `run_exports` field is added. The `run_exports` field specifies a dependency on the `isoseq` subpackage with a maximum pinning of `x.x`. These changes indicate a version upgrade and adjustments to the build configuration, particularly concerning binary relocation and runtime dependencies. ## Possibly related PRs - #49857: Updates the `meta.yaml` file for the `spec2vec` package, including a new `run_exports` section similar to the changes made in the `isoseq` package. - #50977: Updates the `meta.yaml` file for the `biobb_structure_checking` package, including a version update and SHA256 checksum change, aligning with the changes in the `isoseq` PR. - #51372: Updates the `meta.yaml` file for the `resistify` package, reflecting a version increment and SHA256 checksum update, similar to the changes in the `isoseq` PR. - #51486: Updates the `meta.yaml` file for the `neat` package, including a version update and SHA256 checksum change, consistent with the updates in the `isoseq` PR. - #51583: Updates the `meta.yaml` file for the `iSeq` package, including a version update and SHA256 checksum change, paralleling the changes in the `isoseq` PR. - #51584: Also updates the `meta.yaml` file for the `iSeq` package, with similar changes to version and SHA256 checksum, indicating a related update process. - #51638: Updates the `meta.yaml` file for the `neat` package, reflecting a version increment and SHA256 checksum update, consistent with the changes in the `isoseq` PR. ## Suggested labels `autobump`, `new version` ## Suggested reviewers - martin-g

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jmattick commented 3 days ago

@BiocondaBot please fetch artifacts

BiocondaBot commented 3 days ago

No artifacts found on the most recent builds. Either the builds failed, the artifacts have been removed due to age, or the recipe was blacklisted/skipped.

aliciaaevans commented 3 days ago

@BiocondaBot please fetch artifacts

BiocondaBot commented 3 days ago

Package(s) built are ready for inspection:

Arch Package Zip File / Repodata CI Instructions
linux-64 isoseq-4.2.0-h9ee0642_0.tar.bz2 linux-64.zip GitHub Actions
showYou may also use conda to install after downloading and extracting the zip file. conda install -c ./packages <package name>