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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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Add JARVIS3 recipe. #51730

Closed mirakaya closed 2 days ago

mirakaya commented 3 days ago
coderabbitai[bot] commented 3 days ago

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📥 Commits Files that changed from the base of the PR and between d6ea7bc0af6bae832d939b91dfb14d9972e4848e and aaaae41d19ac20857a4522a9e10da01ef9721b5b.
📝 Walkthrough
📝 Walkthrough
📝 Walkthrough
📝 Walkthrough ## Walkthrough The pull request introduces two new files for the JARVIS3 application: `build.sh` and `meta.yaml`. The `build.sh` script automates the build and installation process by setting necessary environment variables, compiling the source code with specific flags for compatibility, and organizing the output binaries. It modifies the `JARVIS3.sh` file to ensure correct path references before executing the installation command. The `meta.yaml` file defines the package configuration for JARVIS3 version 3.7, specifying build instructions, source URL, and SHA-256 checksum for integrity verification. It includes build dependencies, test commands to verify installation, and metadata about the package, such as its homepage and licensing information. Together, these files facilitate the setup and deployment of the JARVIS3 application. ## Possibly related PRs - [#51150] Add hmftools-peach 2.0.0: Introduces a `build.sh` script that automates the build process, similar to the new script for JARVIS3. - [#51151] Add hmftools-redux 1.0_beta: Features a `build.sh` script for automating installation, reflecting a common approach in build management. - [#51324] Update Earl Grey build.sh: Modifies an existing `build.sh` script, aligning with the focus on build automation seen in the JARVIS3 PR. - [#51365] Adding the devider recipe: Includes a `build.sh` script that parallels the introduction of the new script in the JARVIS3 PR. - [#51706] Add libgff recipe: Adds a `build.sh` script, reflecting the same focus on automating the build process as in the JARVIS3 PR. ## Suggested reviewers - mencian

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mirakaya commented 3 days ago

@BiocondaBot please add label