search

bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
1.64k stars 3.27k forks source link

Update pbsv to 2.10.0 #51741

Closed BiocondaBot closed 2 days ago

BiocondaBot commented 3 days ago

Update pbsv: 2.9.0 → 2.10.0

install with bioconda Conda

Info Link or Description
Recipe recipes/pbsv (click to view/edit other files)
Summary pbsv - PacBio structural variant (SV) calling and analysis tools
Home https://github.com/PacificBiosciences/pbbioconda
Releases []()
Recipe Maintainer(s) @armintoepfer, @pb-dseifert
Author @PacificBiosciences

This pull request was automatically generated (see docs).

coderabbitai[bot] commented 3 days ago
📝 Walkthrough ## Walkthrough The pull request involves updates to the `meta.yaml` file for the `pbsv` package. The version number has been incremented from "2.9.0" to "2.10.0", and the SHA256 checksum has been changed from "3daf41d28f5d0063f68c49ce790ab17b648f1d2459122f5c13704598342db97c" to "5b640017716efb2d30a75f5af5fd566eae8ee4d6b9517c0a903296b7d298121c". A new section has been added under `build`, which specifies `run_exports` with a pin for the `pbsv` subpackage, enhancing dependency management. Additionally, the `about` section has been updated to include a new `dev_url` field that points to the development repository. There are no other structural changes to the file, and the overall format remains consistent with the previous version. ## Possibly related PRs - **#51734**: This PR updates the `pbskera` package, which is related to the `pbsv` package, both developed by Pacific Biosciences, and involves changes to the version and SHA256 checksum in the `meta.yaml` file.
📜 Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
📥 Commits Files that changed from the base of the PR and between 98e6ec86fec95e415b666b0b61cdd3c52b52d71d and 48c1f3d002818d304ead3ee0aff452719208db8d.
📒 Files selected for processing (1) * recipes/pbsv/meta.yaml (3 hunks)
🔇 Additional comments (3)
recipes/pbsv/meta.yaml (3)
`16-17`: **LGTM! Good addition of run_exports.** The addition of `run_exports` with `max_pin="x"` is a good practice. This ensures that dependent packages will maintain ABI compatibility by only allowing updates within the same major version. --- `27-27`: **LGTM! Good addition of development URL.** The addition of `dev_url` improves package metadata by providing users with a direct link to the development repository. --- `2-3`: **Verify checksum against official release.** The version bump and checksum update appear correct, but let's verify the checksum matches the official release.
--- Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?
❤️ Share - [X](https://twitter.com/intent/tweet?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A&url=https%3A//coderabbit.ai) - [Mastodon](https://mastodon.social/share?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A%20https%3A%2F%2Fcoderabbit.ai) - [Reddit](https://www.reddit.com/submit?title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&text=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code.%20Check%20it%20out%3A%20https%3A//coderabbit.ai) - [LinkedIn](https://www.linkedin.com/sharing/share-offsite/?url=https%3A%2F%2Fcoderabbit.ai&mini=true&title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&summary=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code)
🪧 Tips ### Chat There are 3 ways to chat with [CodeRabbit](https://coderabbit.ai): - Review comments: Directly reply to a review comment made by CodeRabbit. Example: - `I pushed a fix in commit , please review it.` - `Generate unit testing code for this file.` - `Open a follow-up GitHub issue for this discussion.` - Files and specific lines of code (under the "Files changed" tab): Tag `@coderabbitai` in a new review comment at the desired location with your query. Examples: - `@coderabbitai generate unit testing code for this file.` - `@coderabbitai modularize this function.` - PR comments: Tag `@coderabbitai` in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples: - `@coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.` - `@coderabbitai read src/utils.ts and generate unit testing code.` - `@coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.` - `@coderabbitai help me debug CodeRabbit configuration file.` Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. ### CodeRabbit Commands (Invoked using PR comments) - `@coderabbitai pause` to pause the reviews on a PR. - `@coderabbitai resume` to resume the paused reviews. - `@coderabbitai review` to trigger an incremental review. This is useful when automatic reviews are disabled for the repository. - `@coderabbitai full review` to do a full review from scratch and review all the files again. - `@coderabbitai summary` to regenerate the summary of the PR. - `@coderabbitai resolve` resolve all the CodeRabbit review comments. - `@coderabbitai configuration` to show the current CodeRabbit configuration for the repository. - `@coderabbitai help` to get help. ### Other keywords and placeholders - Add `@coderabbitai ignore` anywhere in the PR description to prevent this PR from being reviewed. - Add `@coderabbitai summary` to generate the high-level summary at a specific location in the PR description. - Add `@coderabbitai` anywhere in the PR title to generate the title automatically. ### CodeRabbit Configuration File (`.coderabbit.yaml`) - You can programmatically configure CodeRabbit by adding a `.coderabbit.yaml` file to the root of your repository. - Please see the [configuration documentation](https://docs.coderabbit.ai/guides/configure-coderabbit) for more information. - If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: `# yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json` ### Documentation and Community - Visit our [Documentation](https://coderabbit.ai/docs) for detailed information on how to use CodeRabbit. - Join our [Discord Community](http://discord.gg/coderabbit) to get help, request features, and share feedback. - Follow us on [X/Twitter](https://twitter.com/coderabbitai) for updates and announcements.
jmattick commented 2 days ago

Please see this PR: https://github.com/bioconda/bioconda-recipes/pull/51738