search

bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
1.64k stars 3.27k forks source link

Update nextclade to 3.9.1 #51763

Closed nextstrain-bot closed 2 days ago

nextstrain-bot commented 2 days ago

Update nextclade: 3.9.0 → 3.9.1.

Home https://github.com/nextstrain/nextclade
Summary Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Recipe maintainers @pvanheus, @corneliusroemer, @ivan-aksamentov

@BiocondaBot please add label

@BiocondaBot please fetch artifacts

Note: this pull request is submitted automatically, triggered by a release in nextstrain/nextclade repo. If you want to get in touch, please ping recipe maintainers and/or someone from @nextstrain/core team.

nextstrain-bot commented 2 days ago

@BiocondaBot please add label

coderabbitai[bot] commented 2 days ago
📝 Walkthrough ## Walkthrough The pull request includes an update to the `meta.yaml` file for the `nextclade` package. The primary change is the increment of the version number from "3.9.0" to "3.9.1". In conjunction with this version change, the SHA256 checksums for various source URLs have been updated to align with the new version. The URLs themselves remain unchanged, but the checksums for the following platforms have been modified: - `x86_64-unknown-linux-gnu` - `aarch64-unknown-linux-gnu` - `x86_64-apple-darwin` - `aarch64-apple-darwin` Each platform's checksum has been updated to reflect the new version, ensuring that the integrity of the package can be verified. No other modifications to the structure or content of the `meta.yaml` file were made. ## Possibly related PRs - **#51543**: This PR updates the `nextclade` package from version 3.8.2 to 3.9.0, which is directly related to the main PR that updates the `nextclade` package from version 3.9.0 to 3.9.1, indicating a sequential versioning change. ## Suggested labels `autobump`, `new version`
📜 Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
📥 Commits Files that changed from the base of the PR and between f83e9c7b5a61fffebb060d7043ecf9bd1af8907c and 7c7226d45462b18e6760f7c936e31a4e41079674.
📒 Files selected for processing (1) * recipes/nextclade/meta.yaml (1 hunks)
🔇 Additional comments (3)
recipes/nextclade/meta.yaml (3) `2-2`: **LGTM: Version update to 3.9.1** Version update matches the PR objective and follows semantic versioning. --- Line range hint `18-57`: **LGTM: Recipe structure and metadata** The recipe follows Bioconda best practices: - Correct build number reset - Appropriate platform-specific configurations - Proper test commands with platform conditions - Complete metadata including license, docs, and maintainers
🧰 Tools
🪛 yamllint [error] 1-1: syntax error: found character '%' that cannot start any token (syntax)
--- `10-16`: **Verify SHA256 checksums against official release** Let's verify the checksums match the official Nextclade 3.9.1 release artifacts.

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share - [X](https://twitter.com/intent/tweet?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A&url=https%3A//coderabbit.ai) - [Mastodon](https://mastodon.social/share?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A%20https%3A%2F%2Fcoderabbit.ai) - [Reddit](https://www.reddit.com/submit?title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&text=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code.%20Check%20it%20out%3A%20https%3A//coderabbit.ai) - [LinkedIn](https://www.linkedin.com/sharing/share-offsite/?url=https%3A%2F%2Fcoderabbit.ai&mini=true&title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&summary=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code)
🪧 Tips ### Chat There are 3 ways to chat with [CodeRabbit](https://coderabbit.ai): - Review comments: Directly reply to a review comment made by CodeRabbit. Example: - `I pushed a fix in commit , please review it.` - `Generate unit testing code for this file.` - `Open a follow-up GitHub issue for this discussion.` - Files and specific lines of code (under the "Files changed" tab): Tag `@coderabbitai` in a new review comment at the desired location with your query. Examples: - `@coderabbitai generate unit testing code for this file.` - `@coderabbitai modularize this function.` - PR comments: Tag `@coderabbitai` in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples: - `@coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.` - `@coderabbitai read src/utils.ts and generate unit testing code.` - `@coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.` - `@coderabbitai help me debug CodeRabbit configuration file.` Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. ### CodeRabbit Commands (Invoked using PR comments) - `@coderabbitai pause` to pause the reviews on a PR. - `@coderabbitai resume` to resume the paused reviews. - `@coderabbitai review` to trigger an incremental review. This is useful when automatic reviews are disabled for the repository. - `@coderabbitai full review` to do a full review from scratch and review all the files again. - `@coderabbitai summary` to regenerate the summary of the PR. - `@coderabbitai resolve` resolve all the CodeRabbit review comments. - `@coderabbitai configuration` to show the current CodeRabbit configuration for the repository. - `@coderabbitai help` to get help. ### Other keywords and placeholders - Add `@coderabbitai ignore` anywhere in the PR description to prevent this PR from being reviewed. - Add `@coderabbitai summary` to generate the high-level summary at a specific location in the PR description. - Add `@coderabbitai` anywhere in the PR title to generate the title automatically. ### CodeRabbit Configuration File (`.coderabbit.yaml`) - You can programmatically configure CodeRabbit by adding a `.coderabbit.yaml` file to the root of your repository. - Please see the [configuration documentation](https://docs.coderabbit.ai/guides/configure-coderabbit) for more information. - If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: `# yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json` ### Documentation and Community - Visit our [Documentation](https://coderabbit.ai/docs) for detailed information on how to use CodeRabbit. - Join our [Discord Community](http://discord.gg/coderabbit) to get help, request features, and share feedback. - Follow us on [X/Twitter](https://twitter.com/coderabbitai) for updates and announcements.