bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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bump prodigal-gv build number #51769

Closed aliciaaevans closed 2 days ago

aliciaaevans commented 2 days ago

Due to CI transition, linux-64 and osx-64 didn't get uploaded. Bumping the build number so the nightly build stops trying to build it.


Please read the guidelines for Bioconda recipes before opening a pull request (PR).

General instructions

Instructions for avoiding API, ABI, and CLI breakage issues

Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes. This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe. If not already present in the meta.yaml, make sure to specify run_exports (see here for the rationale and comprehensive explanation). Add a run_exports section like this:

build:
  run_exports:
    - ...

with ... being one of:

Case run_exports statement
semantic versioning {{ pin_subpackage("myrecipe", max_pin="x") }}
semantic versioning (0.x.x) {{ pin_subpackage("myrecipe", max_pin="x.x") }}
known breakage in minor versions {{ pin_subpackage("myrecipe", max_pin="x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
known breakage in patch versions {{ pin_subpackage("myrecipe", max_pin="x.x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
calendar versioning {{ pin_subpackage("myrecipe", max_pin=None) }}

while replacing "myrecipe" with either name if a name|lower variable is defined in your recipe or with the lowercase name of the package in quotes.

Bot commands for PR management

Please use the following BiocondaBot commands: Everyone has access to the following BiocondaBot commands, which can be given in a comment:
@BiocondaBot please update Merge the master branch into a PR.
@BiocondaBot please add label Add the please review & merge label.
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You can use this to test packages locally.
Note that the @BiocondaBot please merge command is now depreciated. Please just squash and merge instead. Also, the bot watches for comments from non-members that include `@bioconda/` and will automatically re-post them to notify the addressed ``.
coderabbitai[bot] commented 2 days ago
πŸ“ Walkthrough ## Walkthrough The pull request introduces a modification to the `meta.yaml` file for the `prodigal-gv` package. The primary change is the increment of the build number from 3 to 4, indicating a new build iteration of the package. No other modifications were made to the package's logic, error handling, or control flow. The rest of the metadata, including the package name, version, source URL, requirements, test commands, and additional information, remains unchanged. This update is a routine adjustment typically associated with preparing the package for redistribution or deployment. ## Possibly related PRs - #51090: The `meta.yaml` file for the `PhyloAcc` package has a similar change where the build number is incremented from `0` to `1`, indicating a new build iteration. - #51563: The `meta.yaml` file for the `trim-galore` package also shows an increment in the build number from `0` to `1`, aligning with the change made in the main PR. - #51750: The `meta.yaml` file for the `ucsc-bedgraphtobigwig` package reflects a change where the build number is updated from `0` to `1`, similar to the main PR's update for `prodigal-gv`. ## Suggested labels `please review & merge` ## Suggested reviewers - bgruening

πŸ“œ Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
πŸ“₯ Commits Files that changed from the base of the PR and between 3dab52f5f6531b98ebb45f8ab14487e64e7f6b38 and 9cd4fdfe7ca7d2d9bf458dcecc30443ee8f50c15.
πŸ“’ Files selected for processing (1) * recipes/prodigal-gv/meta.yaml (1 hunks)
πŸ”‡ Additional comments (2)
recipes/prodigal-gv/meta.yaml (2) `12-12`: **LGTM! Build number increment addresses the CI upload issue.** The build number increment from 3 to 4 is appropriate to trigger a rebuild and resolve the CI transition issue where linux-64 and osx-64 builds were not uploaded. --- `12-12`: **Verify build status across all platforms.** Since this PR addresses build issues for linux-64 and osx-64, and the package supports additional platforms (linux-aarch64, osx-arm64), let's verify the build status across all architectures. Also applies to: 39-41

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aliciaaevans commented 2 days ago

@BiocondaBot please fetch artifacts

BiocondaBot commented 2 days ago

Package(s) built are ready for inspection:

Arch Package Zip File / Repodata CI Instructions
linux-64 prodigal-gv-2.11.0-he4a0461_4.tar.bz2 linux-64.zip GitHub Actions
showYou may also use conda to install after downloading and extracting the zip file. conda install -c ./packages <package name>
osx-64 prodigal-gv-2.11.0-h10309d6_4.tar.bz2 osx-64.zip GitHub Actions
showYou may also use conda to install after downloading and extracting the zip file. conda install -c ./packages <package name>
osx-arm64 prodigal-gv-2.11.0-hcb76912_4.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/dbfb013f-6b21-4fb7-bd66-a3366dd87057/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 prodigal-gv-2.11.0-h73052cd_4.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/57af1826-cbfd-4173-8e36-a89970e53df5/artifacts/0/tmp/artifacts/packages <package name>