coderabbitai[bot]
commented
2 days ago 📝 Walkthrough
## Walkthrough The pull request involves modifications to the `meta.yaml` file for the `pbmarkdup` package. The version number has been updated from "1.0.3" to "1.1.0", and the SHA256 checksum has been changed to reflect the new version. Additionally, a new section titled `run_exports` has been introduced under the `build` key, which specifies a dependency on the `pbmarkdup` subpackage with a maximum pinning of 'x.x'. The remaining structure of the `meta.yaml` file, including the package name, source URL, about section, extra metadata, and test commands, has not been altered. ## Possibly related PRs - #51724: Update pbaa version 1.1.0 - This PR updates the version and SHA256 checksum in the `meta.yaml` file, similar to the changes made in the main PR for the `pbmarkdup` package. - #51666: update the biopython dependency for haystac - This PR introduces a `run_exports` section in the `meta.yaml` file, which is also a change made in the main PR for `pbmarkdup`. ## Suggested labels `autobump`, `new version`📜 Recent review details
**Configuration used: CodeRabbit UI** **Review profile: CHILL**📥 Commits
Files that changed from the base of the PR and between 2290368c71c6304c260e706a8cbb7fa59db0c841 and 95fbce5e9ae40377dec77bd1ad4d45a66d299d6b.📒 Files selected for processing (1)
* recipes/pbmarkdup/meta.yaml (2 hunks)🔇 Additional comments (3)
recipes/pbmarkdup/meta.yaml (3)
`29-30`: **Excellent addition of run_exports!** The addition of `run_exports` with `max_pin='x.x'` is a great practice that will help prevent ABI/API breakage by ensuring dependent packages are rebuilt when pbmarkdup is updated. This aligns perfectly with Bioconda's guidelines for maintaining package compatibility. --- Line range hint `33-34`: **Verify CLI compatibility.** Since this is a version bump, we should verify that the test command `-h` remains valid and that there are no breaking changes in the CLI interface. --- `2-3`: **Verify SHA256 checksum against official release.** The version bump from 1.0.3 to 1.1.0 looks good, but let's verify the SHA256 checksum matches the official release.Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?
jmattick
BiocondaBot
Update pbmarkdup to 1.1.0
Please read the guidelines for Bioconda recipes before opening a pull request (PR).
General instructions
@BiocondaBot please add labelcommand.@bioconda/corein a comment.Instructions for avoiding API, ABI, and CLI breakage issues
Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes. This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe. If not already present in the meta.yaml, make sure to specify
run_exports(see here for the rationale and comprehensive explanation). Add arun_exportssection like this:with
...being one of:{{ pin_subpackage("myrecipe", max_pin="x") }}{{ pin_subpackage("myrecipe", max_pin="x.x") }}{{ pin_subpackage("myrecipe", max_pin="x.x") }}(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin="x.x.x") }}(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin=None) }}while replacing
"myrecipe"with eithernameif aname|lowervariable is defined in your recipe or with the lowercase name of the package in quotes.Bot commands for PR management
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