search

bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
1.65k stars 3.29k forks source link

Update iseq to 1.3.0 #52273

Closed BiocondaBot closed 5 days ago

BiocondaBot commented 5 days ago

Update iseq: 1.2.0 → 1.3.0

install with bioconda Conda

Info Link or Description
Recipe recipes/iseq (click to view/edit other files)
Summary iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
Home https://github.com/BioOmics/iSeq
Releases []()
Recipe Maintainer(s) @BioOmics
Author @BioOmics

This pull request was automatically generated (see docs).

coderabbitai[bot] commented 5 days ago
📝 Walkthrough ## Walkthrough The pull request introduces updates to the `meta.yaml` file for the `iSeq` package. The version number is incremented from "1.2.0" to "1.3.0", reflecting a new release of the package. Alongside this version increment, the SHA256 checksum for the source tarball has been updated to a new value, which signifies a change in the package's contents. Additionally, the build number has been modified from 1 to 0. The remaining sections of the `meta.yaml` file, including package metadata, requirements, and test commands, have not been altered in this update. ## Possibly related PRs - **#51583**: This PR updates the `iseq` package from version 1.1.0 to 1.2.0, which is directly related to the main PR that updates the `iseq` package from version 1.2.0 to 1.3.0. - **#51584**: Similar to the previous PR, this one also updates the `iseq` package from version 1.1.0 to 1.2.0, indicating a direct connection to the versioning changes in the main PR.

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share - [X](https://twitter.com/intent/tweet?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A&url=https%3A//coderabbit.ai) - [Mastodon](https://mastodon.social/share?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A%20https%3A%2F%2Fcoderabbit.ai) - [Reddit](https://www.reddit.com/submit?title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&text=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code.%20Check%20it%20out%3A%20https%3A//coderabbit.ai) - [LinkedIn](https://www.linkedin.com/sharing/share-offsite/?url=https%3A%2F%2Fcoderabbit.ai&mini=true&title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&summary=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code)
🪧 Tips ### Chat There are 3 ways to chat with [CodeRabbit](https://coderabbit.ai): - Review comments: Directly reply to a review comment made by CodeRabbit. Example: - `I pushed a fix in commit , please review it.` - `Generate unit testing code for this file.` - `Open a follow-up GitHub issue for this discussion.` - Files and specific lines of code (under the "Files changed" tab): Tag `@coderabbitai` in a new review comment at the desired location with your query. Examples: - `@coderabbitai generate unit testing code for this file.` - `@coderabbitai modularize this function.` - PR comments: Tag `@coderabbitai` in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples: - `@coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.` - `@coderabbitai read src/utils.ts and generate unit testing code.` - `@coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.` - `@coderabbitai help me debug CodeRabbit configuration file.` Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. ### CodeRabbit Commands (Invoked using PR comments) - `@coderabbitai pause` to pause the reviews on a PR. - `@coderabbitai resume` to resume the paused reviews. - `@coderabbitai review` to trigger an incremental review. This is useful when automatic reviews are disabled for the repository. - `@coderabbitai full review` to do a full review from scratch and review all the files again. - `@coderabbitai summary` to regenerate the summary of the PR. - `@coderabbitai resolve` resolve all the CodeRabbit review comments. - `@coderabbitai configuration` to show the current CodeRabbit configuration for the repository. - `@coderabbitai help` to get help. ### Other keywords and placeholders - Add `@coderabbitai ignore` anywhere in the PR description to prevent this PR from being reviewed. - Add `@coderabbitai summary` to generate the high-level summary at a specific location in the PR description. - Add `@coderabbitai` anywhere in the PR title to generate the title automatically. ### CodeRabbit Configuration File (`.coderabbit.yaml`) - You can programmatically configure CodeRabbit by adding a `.coderabbit.yaml` file to the root of your repository. - Please see the [configuration documentation](https://docs.coderabbit.ai/guides/configure-coderabbit) for more information. - If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: `# yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json` ### Documentation and Community - Visit our [Documentation](https://docs.coderabbit.ai) for detailed information on how to use CodeRabbit. - Join our [Discord Community](http://discord.gg/coderabbit) to get help, request features, and share feedback. - Follow us on [X/Twitter](https://twitter.com/coderabbitai) for updates and announcements.
coderabbitai[bot] commented 5 days ago
📝 Walkthrough ## Walkthrough The pull request introduces changes to the `meta.yaml` file for the `iSeq` package. The version number has been updated from "1.2.0" to "1.3.0", reflecting a new release. In conjunction with this version increment, the SHA256 checksum for the source tarball has been modified to a new value, which signifies a change in the package's contents. Additionally, the build number has been adjusted from 1 to 0. The overall structure of the `meta.yaml` file, including package metadata, source URL, requirements, and test commands, remains unchanged throughout this update. ## Possibly related PRs - **#51583**: This PR updates the `iseq` package from version 1.1.0 to 1.2.0, which is directly related to the main PR that updates the `iseq` package from version 1.2.0 to 1.3.0. - **#51584**: Similar to the previous PR, this one also updates the `iseq` package from version 1.1.0 to 1.2.0, indicating changes in the same package and versioning context as the main PR.
📜 Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
📥 Commits Reviewing files that changed from the base of the PR and between d0834c4036638208e2a2ddd99e94b30bd9399ead and a0201d4ed7d718f968be295dacc087fd04d87d70.
📒 Files selected for processing (1) * `recipes/iseq/meta.yaml` (1 hunks)
🔇 Additional comments (3)
recipes/iseq/meta.yaml (3) `14-14`: **LGTM! Build number reset is correct** The build number has been appropriately reset to 0 for the new version, following conda-forge's best practices. --- `2-2`: **Verify the upstream release version** The version bump from 1.2.0 to 1.3.0 follows semantic versioning.
✅ Verification successful **Version 1.3.0 is verified and available upstream** The version bump from 1.2.0 to 1.3.0 is valid. The GitHub API response confirms that: - Release v1.3.0 exists in the upstream repository - It was published on November 21, 2024 - The release tarball is accessible at the expected URL - The release includes dependency updates for aspera-cli
🏁 Scripts executed The following scripts were executed for the analysis: Script: ```shell #!/bin/bash # Description: Verify that the release exists in the upstream repository # and matches the version and checksum # Check if the release tag exists gh api \ -H "Accept: application/vnd.github+json" \ repos/BioOmics/iSeq/releases/tags/v1.3.0 # Verify the tarball URL is accessible curl -I https://github.com/BioOmics/iSeq/releases/download/v1.3.0/iSeq-v1.3.0.tar.gz ``` Length of output: 8001
--- `10-10`: **Verify the source tarball checksum** The SHA256 checksum format is valid (64 characters, hexadecimal).

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share - [X](https://twitter.com/intent/tweet?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A&url=https%3A//coderabbit.ai) - [Mastodon](https://mastodon.social/share?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A%20https%3A%2F%2Fcoderabbit.ai) - [Reddit](https://www.reddit.com/submit?title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&text=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code.%20Check%20it%20out%3A%20https%3A//coderabbit.ai) - [LinkedIn](https://www.linkedin.com/sharing/share-offsite/?url=https%3A%2F%2Fcoderabbit.ai&mini=true&title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&summary=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code)
🪧 Tips ### Chat There are 3 ways to chat with [CodeRabbit](https://coderabbit.ai): - Review comments: Directly reply to a review comment made by CodeRabbit. Example: - `I pushed a fix in commit , please review it.` - `Generate unit testing code for this file.` - `Open a follow-up GitHub issue for this discussion.` - Files and specific lines of code (under the "Files changed" tab): Tag `@coderabbitai` in a new review comment at the desired location with your query. Examples: - `@coderabbitai generate unit testing code for this file.` - `@coderabbitai modularize this function.` - PR comments: Tag `@coderabbitai` in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples: - `@coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.` - `@coderabbitai read src/utils.ts and generate unit testing code.` - `@coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.` - `@coderabbitai help me debug CodeRabbit configuration file.` Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. ### CodeRabbit Commands (Invoked using PR comments) - `@coderabbitai pause` to pause the reviews on a PR. - `@coderabbitai resume` to resume the paused reviews. - `@coderabbitai review` to trigger an incremental review. This is useful when automatic reviews are disabled for the repository. - `@coderabbitai full review` to do a full review from scratch and review all the files again. - `@coderabbitai summary` to regenerate the summary of the PR. - `@coderabbitai resolve` resolve all the CodeRabbit review comments. - `@coderabbitai configuration` to show the current CodeRabbit configuration for the repository. - `@coderabbitai help` to get help. ### Other keywords and placeholders - Add `@coderabbitai ignore` anywhere in the PR description to prevent this PR from being reviewed. - Add `@coderabbitai summary` to generate the high-level summary at a specific location in the PR description. - Add `@coderabbitai` anywhere in the PR title to generate the title automatically. ### CodeRabbit Configuration File (`.coderabbit.yaml`) - You can programmatically configure CodeRabbit by adding a `.coderabbit.yaml` file to the root of your repository. - Please see the [configuration documentation](https://docs.coderabbit.ai/guides/configure-coderabbit) for more information. - If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: `# yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json` ### Documentation and Community - Visit our [Documentation](https://docs.coderabbit.ai) for detailed information on how to use CodeRabbit. - Join our [Discord Community](http://discord.gg/coderabbit) to get help, request features, and share feedback. - Follow us on [X/Twitter](https://twitter.com/coderabbitai) for updates and announcements.
BioOmics commented 5 days ago

There are some other changes in meta.yml besides the version bump, see https://github.com/bioconda/bioconda-recipes/pull/52271 instead and ignore this one.