pb-dseifert
commented
6 years ago @bgruening blasr should be fine now
Open bgruening opened 6 years ago
pb-dseifert
commented
6 years ago @bgruening blasr should be fine now
fasnicar
commented
6 years ago @bgruening I checked the status of metaphlan2 and graphlan
recipes/metaphlan2/2.5.0 ['missing_license']
As I was asking in #9105, the old MetaPhlAn packages (versions: 2.2.0, 2.5.0, 2.6.0, and 2.7.5) should be marked as "broken" and only the latest 2.7.7 should be available in Bioconda, so maybe this should resolve the missing_license issue for the old 2.5.0 version
recipes/graphlan ['missing_license' 'missing_hash']
I checked the latest recipe and it already includes the license:
license: MIT License license_family: MIT license_file: license.txt
and I also have the md5 checksum:
{% set md5 = "5921d3cc2995aa66911bdf4ec6332e0a" %}
What should I do to fix the GraPhlAn issues? Is it a problem with md5, and should I use sha256 instead?
Many thanks, Francesco
jvolkening
commented
6 years ago Currently working on:
hardklor
all ['missing hash'] errors
martin-raden
commented
5 years ago gdsctools tackled in #13558
epruesse
commented
5 years ago I was thinking to have list like this one on the Docs. Ideas on how to present the data welcome.
'uses_git_url']" recipes/bowtie | ['should_be_noarch'] recipes/bowtie2 | ['should_be_noarch'] recipes/bowtie2/2.2.4 | ['missing_hash'] recipes/bpp-seq | ['missing_tests'] recipes/braker | ['missing_license' 'missing_hash'] recipes/bx-python | ['should_be_noarch'] recipes/cage | ['missing_hash' 'uses_git_url'] recipes/ccat/3.0 | ['missing_license'] recipes/centrifuge | ['should_be_noarch'] recipes/check-sort-order | ['missing_hash'] recipes/chicagotools | ['should_be_noarch'] recipes/cluster-picker | ['uses_javajdk'] recipes/clustergrammer | ['should_be_noarch'] recipes/cmph | ['missing_license'] recipes/cofold | ['missing_hash'] recipes/commet | ['should_use_compilers'] recipes/concoct | ['should_be_noarch'] recipes/connor | ['should_be_noarch'] recipes/cosi2 | ['should_be_noarch'] recipes/cosi2/2.02 | ['should_be_noarch'] recipes/cufflinks | ['missing_hash'] recipes/cuneiform/1.1.0 | ['missing_tests' 'missing_hash'] recipes/curesim | ['uses_javajdk'] recipes/cyordereddict | ['should_be_noarch'] recipes/cyvcf2 | ['should_be_noarch'] recipes/cyvcf2/0.7.2 | ['should_be_noarch'] recipes/dbg2olc | ['missing_license'] recipes/debwt | ['missing_hash' 'uses_git_url'] recipes/deeptools | ['should_be_noarch'] recipes/deeptools/1.5.8.2 | ['should_be_noarch'] recipes/deeptools/1.5.9.1 | ['should_be_noarch'] recipes/deeptools/2.3.5 | ['should_be_noarch'] recipes/deeptools/2.4.1 | ['should_be_noarch'] recipes/deepvariant | ['missing_tests'] recipes/dfam | ['missing_hash'] recipes/discosnp | ['should_be_noarch'] recipes/discovar | ['missing_tests' 'missing_hash'] recipes/discovar-denovo | ['missing_tests' 'missing_hash'] recipes/dreamtools | ['should_be_noarch'] recipes/drive | ['missing_hash'] recipes/ecopy | ['should_be_noarch'] recipes/elasticluster | ['missing_hash'] recipes/embassy-phylip | ['should_be_noarch'] recipes/emboss | ['should_be_noarch'] recipes/emmix/1.3 | ['missing_tests'] recipes/eoulsan | ['uses_javajdk'] recipes/estmapper | ['should_be_noarch'] recipes/eta | ['should_be_noarch'] recipes/express | ['missing_hash'] recipes/extract_fullseq | ['missing_hash'] recipes/fann | ['missing_tests'] recipes/fastq-join | ['missing_hash'] recipes/fastq-multx | ['missing_hash'] recipes/fastqc/0.10.1 | ['missing_hash' 'uses_javajdk'] recipes/fastqc/0.11.3 | ['missing_hash' 'uses_javajdk'] recipes/fiji/20141125 | ['uses_javajdk'] recipes/fiji/20151222 | ['uses_javajdk'] recipes/flask-markdown | ['should_be_noarch'] recipes/flux-simulator | ['uses_javajdk'] recipes/freebayes | ['should_be_noarch'] recipes/fwdpy | ['should_be_noarch'] recipes/gat | ['should_be_noarch'] recipes/gb_taxonomy_tools | ['missing_license' 'missing_hash'] recipes/gdal | ['missing_tests' 'missing_hash'] recipes/gdsctools | ['missing_tests' 'missing_home'] recipes/genblasta | ['missing_hash'] recipes/genblastg | ['missing_hash'] recipes/genometools-genometools/1.5.10-nocairo | ['should_be_noarch'] recipes/genomicassertions | ['should_be_noarch'] recipes/genonets | ['should_be_noarch'] recipes/gfinisher | ['missing_hash' 'uses_javajdk'] recipes/glpk | ['missing_tests'] recipes/gocr/0.50 | ['missing_hash'] recipes/google-api-python-client | ['missing_summary'] recipes/graphlan | ['missing_license' 'missing_hash'] recipes/graphlite | ['should_be_noarch'] recipes/gtf_to_genes | ['has_windows_bat_file'] recipes/gvcf-regions | ['missing_hash'] recipes/gvcftools | ['missing_hash'] recipes/hapbin | ['compilers_must_be_in_build'] recipes/haploclique/1.3.1 | ['should_be_noarch'] recipes/hardklor | ['missing_hash'] recipes/hera | ['should_be_noarch'] recipes/hivtrace | ['missing_hash' 'uses_git_url'] recipes/hmmlearn | ['missing_hash'] recipes/htseq | ['should_be_noarch'] recipes/hurry.filesize | ['missing_home'] recipes/ibdne | ['uses_javajdk'] recipes/ibdseq | ['uses_javajdk'] recipes/icqsol | ['missing_hash' 'uses_git_url'] recipes/idba | ['should_be_noarch'] recipes/ig-flowtools | ['should_be_noarch'] recipes/igblast/1.4.0 | ['missing_hash'] recipes/igv | ['missing_tests'] recipes/illuminate | ['should_be_noarch'] recipes/impute2 | ['missing_hash'] recipes/intemap | ['missing_license'] recipes/intervaltree | ['in_other_channels' 'should_be_noarch'] recipes/irida-linker | ['missing_home'] recipes/itk | ['missing_tests'] recipes/itk/4.6.1 | ['missing_tests'] recipes/jaffa | ['missing_tests'] recipes/java-lsd | ['missing_hash' 'uses_javajdk'] recipes/jemalloc | ['in_other_channels'] recipes/jq | ['in_other_channels'] recipes/kaiju/1.0 | ['missing_hash' 'uses_git_url'] recipes/khmer | ['should_be_noarch'] recipes/khmer/2.0 | ['should_be_noarch'] recipes/khmer/2.1 | ['should_be_noarch'] recipes/kiwidist | ['missing_home'] recipes/kronik | ['missing_hash'] recipes/lace | ['should_be_noarch'] recipes/lap | ['missing_license'] recipes/lapack | ['in_other_channels' 'missing_tests'] recipes/last | ['should_be_noarch'] recipes/last/490 | ['should_be_noarch'] recipes/last/638 | ['should_be_noarch'] recipes/last/874 | ['should_be_noarch'] recipes/leptonica/1.73 | ['missing_hash'] recipes/libdb | ['in_other_channels' 'missing_tests' 'missing_hash'] recipes/libsvm/3.16 | ['missing_home' 'missing_license' 'missing_hash' 'uses_git_url'] recipes/lighter | ['missing_hash'] recipes/livekraken | ['should_be_noarch'] recipes/loompy | ['in_other_channels'] recipes/mapsplice | ['missing_home'] recipes/maxentpy | ['should_be_noarch'] recipes/maxentscan | ['missing_license'] recipes/mbuffer | ['missing_hash'] recipes/medusa | ['missing_hash' 'uses_git_url'] recipes/megagta | ['missing_hash'] recipes/megahit | ['should_be_noarch'] recipes/melt | ['should_be_noarch'] recipes/meme | ['should_be_noarch'] recipes/mendelscan | ['uses_javajdk'] recipes/meryl | ['should_be_noarch'] recipes/metacluster | ['missing_tests'] recipes/metaphlan2/2.5.0 | ['missing_license'] recipes/metavelvet-annois | ['missing_hash'] recipes/metavelvet-sl | ['missing_license'] recipes/metavelvet-sl-feature-extraction | ['missing_license'] recipes/metavelvet-sl-pipeline | ['missing_license'] recipes/metavelvet/1.1.01 | ['missing_hash'] recipes/mgltools | ['missing_license'] recipes/minepy | ['should_be_noarch'] recipes/minimock | ['should_be_noarch'] recipes/mirdeep2/2.0.0.7 | ['missing_tests' 'missing_hash' 'uses_git_url'] recipes/moreutils | ['missing_hash'] recipes/mothur/1.25.0 | ['missing_summary'] recipes/mpa-portable | ['missing_hash'] recipes/mvicuna | ['missing_hash' 'uses_git_url'] recipes/mysql-connector-c | ['in_other_channels'] recipes/nanocall | ['missing_hash' 'uses_git_url'] recipes/nanopolish | ['should_be_noarch'] recipes/nasm | ['in_other_channels'] recipes/netcdf-metadata-info | ['should_use_compilers'] recipes/netifaces | ['in_other_channels' 'missing_summary'] recipes/networkxgmml | ['missing_tests'] recipes/newt | ['missing_summary'] recipes/nglview | ['in_other_channels'] recipes/ngs-bits | ['should_be_noarch'] recipes/nmrglue | ['should_be_noarch'] recipes/novoplasty | ['missing_license' 'missing_summary'] recipes/np-likeness-scorer | ['missing_license'] recipes/oases | ['missing_hash' 'uses_git_url'] recipes/ocrad/0.21 | ['missing_tests' 'missing_hash'] recipes/ogdf | ['missing_tests'] recipes/openpyxl | ['should_be_noarch'] recipes/openpyxl/1.8.6 | ['should_be_noarch'] recipes/opsin/1.4.0 | ['missing_hash' 'uses_javajdk'] recipes/opsin/2.1.0 | ['missing_hash' 'uses_javajdk'] recipes/pairix | ['should_be_noarch'] recipes/pantools | ['uses_javajdk'] recipes/pasta/0.2 | ['uses_javajdk' 'should_be_noarch'] recipes/pasta/1.7.8 | ['uses_javajdk' 'should_be_noarch'] recipes/pauda | ['missing_hash' 'uses_javajdk'] recipes/pbbam | ['missing_hash' 'uses_git_url'] recipes/pbdagcon | ['missing_hash' 'uses_git_url'] recipes/pbgzip | ['missing_tests' 'missing_hash'] recipes/peewee | ['should_be_noarch'] recipes/pepnovo | ['missing_license'] recipes/pepr | ['should_be_noarch'] recipes/peptide-shaker/1.11.0 | ['missing_hash' 'uses_javajdk'] recipes/peptide-shaker/1.13.3 | ['missing_hash' 'uses_javajdk'] recipes/peptide-shaker/1.13.6 | ['missing_hash' 'uses_javajdk'] recipes/peptide-shaker/1.14.4 | ['missing_hash' 'uses_javajdk'] recipes/peptide-shaker/1.14.6 | ['missing_hash'] recipes/peptide-shaker/1.15.0 | ['missing_hash'] recipes/peptide-shaker/1.15.1 | ['missing_hash'] recipes/perl-app-cpanminus | ['in_other_channels'] recipes/perl-archive-extract | ['missing_hash'] recipes/perl-archive-zip | ['missing_tests' 'missing_hash'] recipes/perl-b/1.48 | ['missing_tests'] recipes/perl-bio-db-hts | ['missing_tests'] recipes/perl-bio-db-sam | ['missing_hash'] recipes/perl-blib/1.06 | ['missing_tests'] recipes/perl-bloom-faster | ['missing_tests'] recipes/perl-cgi | ['missing_hash'] recipes/perl-class-accessor | ['missing_tests'] recipes/perl-compress-raw-zlib | ['missing_hash'] recipes/perl-config-simple | ['missing_tests'] recipes/perl-cpan-meta | ['missing_tests'] recipes/perl-cpan-meta-validator/2.140640 | ['missing_tests'] recipes/perl-cpan-shell/5.5004 | ['missing_tests' 'missing_summary'] recipes/perl-data-dump | ['missing_tests'] recipes/perl-data-uuid | ['missing_hash'] recipes/perl-date-format/2.30 | ['missing_tests'] recipes/perl-db-file | ['missing_hash'] recipes/perl-dbd-mysql | ['missing_hash'] recipes/perl-dbd-sqlite | ['missing_hash'] recipes/perl-dynaloader/1.25 | ['missing_tests'] recipes/perl-encode-locale | ['missing_hash'] recipes/perl-extutils-makemaker | ['missing_summary'] recipes/perl-file-compare/1.1006 | ['missing_tests'] recipes/perl-file-copy-recursive | ['missing_summary' 'missing_hash'] recipes/perl-file-fetch | ['missing_hash'] recipes/perl-file-find/1.27 | ['missing_tests'] recipes/perl-file-homedir | ['missing_tests'] recipes/perl-file-path/2.12 | ['missing_tests'] recipes/perl-file-sharedir | ['missing_hash'] recipes/perl-file-sharedir-install | ['missing_hash'] recipes/perl-file-spec/3.48_01 | ['missing_tests'] recipes/perl-filesys-df | ['missing_tests'] recipes/perl-findbin/1.51 | ['missing_tests'] recipes/perl-heap-simple-perl | ['missing_tests'] recipes/perl-heap-simple-xs | ['missing_tests'] recipes/perl-inline | ['missing_tests'] recipes/perl-inline-c | ['missing_tests'] recipes/perl-integer/1.01 | ['missing_tests'] recipes/perl-io-all | ['missing_tests'] recipes/perl-io-compress-deflate/2.064 | ['missing_tests'] recipes/perl-io-handle/1.35 | ['missing_tests'] recipes/perl-io-scalar/2.111 | ['missing_tests'] recipes/perl-io-string | ['missing_tests'] recipes/perl-io-uncompress-bunzip2/2.064 | ['missing_tests'] recipes/perl-io-uncompress-gunzip/2.064 | ['missing_tests'] recipes/perl-io-uncompress-rawinflate/2.064 | ['missing_tests'] recipes/perl-ipc-system-simple | ['missing_hash'] recipes/perl-list-uniq | ['missing_tests'] recipes/perl-list-util/1.38 | ['missing_tests'] recipes/perl-locale/1.03 | ['missing_tests'] recipes/perl-lwp-protocol-https | ['missing_hash'] recipes/perl-lwp-simple | ['missing_hash'] recipes/perl-math-bezier | ['missing_tests'] recipes/perl-math-vecstat | ['missing_tests'] recipes/perl-mime-quotedprint/3.13 | ['missing_tests'] recipes/perl-mixin-linewise | ['missing_tests'] recipes/perl-moosex-fileattribute | ['missing_tests'] recipes/perl-net-ftp/2.79 | ['missing_tests'] recipes/perl-net-netrc/2.14 | ['missing_tests'] recipes/perl-pcap | ['missing_hash'] recipes/perl-pdf-api2 | ['missing_hash'] recipes/perl-perlio-encoding/0.18 | ['missing_tests'] recipes/perl-perlio/1.09 | ['missing_tests'] recipes/perl-pod-plaintext/2.07 | ['missing_tests'] recipes/perl-pod-simple-text/3.28 | ['missing_tests'] recipes/perl-posix/1.38_03 | ['missing_tests' 'missing_summary'] recipes/perl-readonly | ['missing_tests'] recipes/perl-role-tiny-with/2.000005 | ['missing_tests'] recipes/perl-sanger-cgp-allelecount | ['missing_hash'] recipes/perl-sanger-cgp-battenberg | ['missing_hash'] recipes/perl-sanger-cgp-vcf | ['missing_hash'] recipes/perl-specio-exporter/0.36 | ['missing_tests'] recipes/perl-statistics-basic | ['missing_summary'] recipes/perl-statistics-descriptive/3.0609 | ['missing_hash'] recipes/perl-symbol/1.07 | ['missing_tests'] recipes/perl-tap-harness-env/3.30 | ['missing_tests'] recipes/perl-test-builder-tester | ['missing_tests'] recipes/perl-test-classapi | ['missing_tests'] recipes/perl-test-more/1.001002 | ['missing_tests'] recipes/perl-test2/1.302075 | ['missing_tests'] recipes/perl-text-soundex | ['in_other_channels' 'missing_hash'] recipes/perl-text-tabs/2013.0523 | ['missing_tests'] recipes/perl-text-wrap | ['missing_tests'] recipes/perl-tie-hash/1.05 | ['missing_tests' 'missing_summary'] recipes/perl-time-hires | ['missing_hash'] recipes/perl-vars/1.03 | ['missing_tests'] recipes/perl-warnings-register/1.03 | ['missing_tests'] recipes/perl-xsloader | ['missing_tests'] recipes/phylip | ['should_be_noarch'] recipes/picard/1.126 | ['uses_javajdk'] recipes/picard/1.141 | ['uses_javajdk'] recipes/picard/1.97 | ['uses_javajdk'] recipes/picard/2.0.1 | ['missing_hash' 'uses_javajdk'] recipes/picard/2.5.0 | ['uses_javajdk'] recipes/picard/2.7.1 | ['uses_javajdk'] recipes/pipmir | ['uses_javajdk'] recipes/pirs | ['should_use_compilers'] recipes/plastid | ['should_be_noarch'] recipes/plink2 | ['missing_hash'] recipes/pomegranate | ['should_be_noarch'] recipes/popt | ['in_other_channels'] recipes/potrace/1.11 | ['missing_hash'] recipes/pout2mzid | ['missing_license' 'missing_hash' 'uses_git_url'] recipes/prodigal | ['missing_hash'] recipes/py2bit | ['should_be_noarch'] recipes/pyalveo | ['should_be_noarch'] recipes/pyasp/1.4.3 | ['should_be_noarch'] recipes/pybedtools | ['should_be_noarch'] recipes/pybigwig/0.1.11 | ['missing_tests'] recipes/pycsg | ['missing_hash' 'uses_git_url'] recipes/pygraphviz | ['should_be_noarch'] recipes/pygresql | ['should_be_noarch'] recipes/pyhashxx | ['should_be_noarch'] recipes/pymvpa/2.6.0 | ['should_be_noarch'] recipes/pyopt | ['missing_summary'] recipes/pypiper | ['missing_license'] recipes/pypore | ['missing_license'] recipes/pysam/0.8.3 | ['should_be_noarch'] recipes/pysam/0.9.1 | ['should_be_noarch'] recipes/pysamstats | ['should_be_noarch'] recipes/pysftp | ['in_other_channels'] recipes/pytest-timeout | ['in_other_channels' 'missing_tests'] recipes/python-consensuscore | ['should_be_noarch'] recipes/python-edlib | ['should_be_noarch'] recipes/python-fakemp | ['should_be_noarch'] recipes/python-hppy | ['missing_hash' 'uses_git_url' 'should_be_noarch'] recipes/python-hyphy-python | ['should_be_noarch'] recipes/python-levenshtein | ['in_other_channels' 'missing_hash' 'should_be_noarch'] recipes/python-wget | ['missing_tests'] recipes/pytriangle | ['missing_hash' 'uses_git_url'] recipes/pywdl | ['missing_hash'] recipes/qcli | ['missing_home'] recipes/qtip | ['should_be_noarch'] recipes/quake | ['missing_license'] recipes/quicksect | ['should_be_noarch'] recipes/r-argumentcheck | ['in_other_channels'] recipes/r-bio3d | ['in_other_channels'] recipes/r-biodb | ['should_use_compilers'] recipes/r-biodb/1.0.2 | ['should_use_compilers'] recipes/r-biomark | ['in_other_channels'] recipes/r-boutroslabplottinggeneral | ['missing_license' 'missing_summary'] recipes/r-chbutils | ['missing_hash'] recipes/r-cnogpro | ['in_other_channels'] recipes/r-data.table/1.10.4 | ['in_other_channels'] recipes/r-deoptimr | ['in_other_channels'] recipes/r-diptest | ['in_other_channels'] recipes/r-diptest/0.75_7 | ['in_other_channels'] recipes/r-dpeak | ['missing_hash' 'uses_git_url'] recipes/r-drc | ['in_other_channels'] recipes/r-dynamictreecut | ['in_other_channels'] recipes/r-gam | ['in_other_channels'] recipes/r-gbm | ['in_other_channels'] recipes/r-genabel | ['in_other_channels'] recipes/r-genabel.data | ['in_other_channels'] recipes/r-genenet | ['in_other_channels'] recipes/r-giant | ['in_other_channels'] recipes/r-gprofiler | ['in_other_channels'] recipes/r-gpseq | ['in_other_channels'] recipes/r-grimport | ['in_other_channels'] recipes/r-gsalib | ['in_other_channels'] recipes/r-gsmoothr | ['in_other_channels'] recipes/r-haplo.stats | ['in_other_channels'] recipes/r-ic10trainingdata | ['in_other_channels'] recipes/r-icluster | ['in_other_channels'] recipes/r-idr | ['in_other_channels'] recipes/r-inlinedocs | ['in_other_channels'] recipes/r-km.ci | ['in_other_channels'] recipes/r-kmsurv | ['in_other_channels'] recipes/r-kriging | ['in_other_channels'] recipes/r-lsd | ['in_other_channels'] recipes/r-maldiquant | ['in_other_channels'] recipes/r-metarnaseq | ['in_other_channels'] recipes/r-microseq | ['in_other_channels'] recipes/r-mixomics | ['in_other_channels'] recipes/r-mlgt | ['in_other_channels'] recipes/r-mqtl | ['in_other_channels'] recipes/r-oai | ['should_use_compilers'] recipes/r-pamr | ['in_other_channels'] recipes/r-patpro | ['in_other_channels'] recipes/r-peer | ['missing_home'] recipes/r-pinfsc50 | ['in_other_channels'] recipes/r-plasmidprofiler | ['in_other_channels'] recipes/r-precrec | ['in_other_channels'] recipes/r-probmetab/1.0 | ['missing_hash'] recipes/r-probmetab/1.1 | ['missing_hash'] recipes/r-purbayes | ['in_other_channels'] recipes/r-qiimer | ['in_other_channels'] recipes/r-qtl | ['in_other_channels'] recipes/r-rcircos | ['in_other_channels'] recipes/r-rcircos/1.1.3 | ['missing_hash'] recipes/r-readbrukerflexdata | ['in_other_channels'] recipes/r-readmzxmldata | ['in_other_channels'] recipes/r-rematch2 | ['in_other_channels'] recipes/r-rentrez | ['in_other_channels'] recipes/r-robustrankaggreg | ['in_other_channels'] recipes/r-rphylip | ['in_other_channels'] recipes/r-seqinr | ['in_other_channels'] recipes/r-smvar | ['in_other_channels'] recipes/r-snpassoc | ['in_other_channels'] recipes/r-solarius | ['in_other_channels'] recipes/r-tfmpvalue | ['in_other_channels'] recipes/r-wicket | ['should_use_compilers'] recipes/r-xmlrpc | ['missing_hash'] recipes/r-xnomial | ['in_other_channels'] recipes/racon | ['should_be_noarch'] recipes/rascaf | ['missing_license'] recipes/raxml/7.3.0 | ['missing_hash'] recipes/rdkit/2015.09.2 | ['missing_hash'] recipes/rdptools | ['missing_hash' 'uses_git_url'] recipes/reago | ['missing_license'] recipes/recon | ['missing_hash'] recipes/regex | ['in_other_channels' 'should_be_noarch'] recipes/relocate2/2.0.1 | ['missing_home' 'missing_license' 'missing_summary'] recipes/remurna | ['missing_license'] recipes/repeatscout | ['missing_hash'] recipes/requests-cache | ['should_be_noarch'] recipes/requests-mock | ['missing_tests' 'missing_home' 'should_be_noarch'] recipes/rna-seqc | ['missing_license'] recipes/rnablueprint | ['should_use_compilers'] recipes/rnabob | ['missing_home' 'missing_license'] recipes/rnacode/0.3 | ['missing_license'] recipes/rnashapes/2.1.6 | ['missing_license'] recipes/rnastructure/5.7 | ['missing_license'] recipes/rnastructure/6.0 | ['missing_license'] recipes/rnaz | ['missing_hash'] recipes/ruby-dna-tools | ['should_be_noarch'] recipes/s3gof3r | ['missing_hash'] recipes/sbt | ['missing_summary' 'uses_javajdk'] recipes/scala | ['missing_summary' 'uses_javajdk'] recipes/scikit-bio | ['in_other_channels'] recipes/scoary | ['missing_hash'] recipes/searchgui/2.1.4 | ['missing_hash' 'uses_javajdk'] recipes/searchgui/2.9.0 | ['missing_hash' 'uses_javajdk'] recipes/searchgui/3.1.4 | ['missing_hash' 'uses_javajdk'] recipes/searchgui/3.2.3 | ['missing_hash' 'uses_javajdk'] recipes/searchgui/3.2.5 | ['missing_hash'] recipes/searchgui/3.2.6 | ['missing_hash'] recipes/searchgui/3.2.7 | ['missing_hash'] recipes/segemehl | ['missing_license'] recipes/sentieon | ['missing_tests' 'missing_hash' 'should_use_compilers'] recipes/seq2c | ['missing_hash'] recipes/seq2hla | ['missing_hash'] recipes/sequana | ['missing_home'] recipes/setuptools_cython | ['missing_tests' 'should_be_noarch'] recipes/sharedmem | ['missing_license' 'should_be_noarch'] recipes/shorah/1.1.0 | ['should_be_noarch'] recipes/shorah/1.1.3 | ['should_be_noarch'] recipes/simwalk | ['should_use_compilers'] recipes/singlecell-barcodes | ['missing_tests'] recipes/sixgill | ['missing_home'] recipes/skewer/0.1.126 | ['missing_hash'] recipes/slang | ['missing_summary'] recipes/smalt | ['should_be_noarch'] recipes/smhasher | ['should_be_noarch'] recipes/snap | ['missing_hash'] recipes/snap-aligner | ['missing_hash'] recipes/snoscan | ['missing_license'] recipes/snpeff/4.1l | ['uses_javajdk'] recipes/snpeff/4.2 | ['uses_javajdk'] recipes/snpsift/4.1l | ['uses_javajdk'] recipes/snpsift/4.2 | ['uses_javajdk'] recipes/soapdenovo2 | ['missing_hash'] recipes/soapdenovo2-errorcorrection | ['missing_tests' 'missing_hash'] recipes/soapdenovo2-prepare | ['missing_hash'] recipes/socksipy-branch | ['missing_tests'] recipes/somatic-sniper | ['missing_hash'] recipes/sourmash | ['should_be_noarch'] recipes/spanki | ['missing_hash' 'uses_git_url'] recipes/sparc | ['missing_license' 'missing_hash'] recipes/sparseassembler | ['missing_license'] recipes/spectra-cluster-cli | ['missing_hash' 'uses_javajdk'] recipes/sprinkles | ['missing_tests' 'should_be_noarch'] recipes/sqlitebrowser | ['missing_tests' 'missing_hash'] recipes/squeakr | ['should_not_use_fn'] recipes/srprism | ['missing_license'] recipes/stacks/1.37 | ['missing_hash'] recipes/starseqr | ['should_be_noarch'] recipes/stringtie | ['should_be_noarch'] recipes/stringtie/1.3.3 | ['should_be_noarch'] recipes/svgutils | ['missing_hash' 'uses_git_url'] recipes/svtools/0.1.1 | ['missing_license'] recipes/swarm | ['should_be_noarch'] recipes/sweepfinder2 | ['missing_hash'] recipes/taxtastic | ['should_be_noarch'] recipes/tclap/1.2.1 | ['missing_tests' 'missing_hash'] recipes/tdrmapper | ['missing_hash' 'uses_git_url'] recipes/tesseract/3.04.01 | ['missing_hash'] recipes/tgt | ['should_be_noarch'] recipes/tidyp | ['missing_tests'] recipes/tophat-recondition | ['should_be_noarch'] recipes/translatorx | ['missing_license'] recipes/treebest | ['missing_home'] recipes/treetime/0.1 | ['should_be_noarch'] recipes/trimmomatic/0.35 | ['uses_javajdk'] recipes/trinculo | ['missing_hash'] recipes/trinity/2.2.0 | ['missing_license' 'missing_hash' 'uses_javajdk'] recipes/trinity/2.3.2 | ['missing_hash' 'uses_javajdk'] recipes/twobitreader | ['should_be_noarch'] recipes/ucsc-addcols | ['missing_hash'] recipes/ucsc-ameme | ['missing_hash'] recipes/ucsc-autodtd | ['missing_hash'] recipes/ucsc-autosql | ['missing_hash'] recipes/ucsc-autoxml | ['missing_hash'] recipes/ucsc-avecols | ['missing_hash'] recipes/ucsc-axtchain | ['missing_hash'] recipes/ucsc-axtsort | ['missing_hash'] recipes/ucsc-axtswap | ['missing_hash'] recipes/ucsc-axttomaf | ['missing_hash'] recipes/ucsc-axttopsl | ['missing_hash'] recipes/ucsc-bamtopsl | ['missing_hash'] recipes/ucsc-bedclip | ['missing_hash'] recipes/ucsc-bedcommonregions | ['missing_hash'] recipes/ucsc-bedcoverage | ['missing_hash'] recipes/ucsc-bedextendranges | ['missing_hash'] recipes/ucsc-bedgeneparts | ['missing_hash'] recipes/ucsc-bedgraphpack | ['missing_hash'] recipes/ucsc-bedgraphtobigwig | ['missing_hash'] recipes/ucsc-bedintersect | ['missing_hash'] recipes/ucsc-beditemoverlapcount | ['missing_hash'] recipes/ucsc-bedpileups | ['missing_hash'] recipes/ucsc-bedremoveoverlap | ['missing_hash'] recipes/ucsc-bedrestricttopositions | ['missing_hash'] recipes/ucsc-bedsort | ['missing_hash'] recipes/ucsc-bedtobigbed | ['missing_hash'] recipes/ucsc-bedtogenepred | ['missing_hash'] recipes/ucsc-bedtopsl | ['missing_hash'] recipes/ucsc-bedweedoverlapping | ['missing_hash'] recipes/ucsc-bigbedinfo | ['missing_hash'] recipes/ucsc-bigbednameditems | ['missing_hash'] recipes/ucsc-bigbedsummary | ['missing_hash'] recipes/ucsc-bigbedtobed | ['missing_hash'] recipes/ucsc-bigmaftomaf | ['missing_hash'] recipes/ucsc-bigpsltopsl | ['missing_hash'] recipes/ucsc-bigwigaverageoverbed | ['missing_hash'] recipes/ucsc-bigwigcat | ['missing_hash'] recipes/ucsc-bigwigcluster | ['missing_hash'] recipes/ucsc-bigwigcorrelate | ['missing_hash'] recipes/ucsc-bigwiginfo | ['missing_hash'] recipes/ucsc-bigwigmerge | ['missing_hash'] recipes/ucsc-bigwigsummary | ['missing_hash'] recipes/ucsc-bigwigtobedgraph | ['missing_hash'] recipes/ucsc-bigwigtowig | ['missing_hash'] recipes/ucsc-blasttopsl | ['missing_hash'] recipes/ucsc-blat | ['missing_hash'] recipes/ucsc-catdir | ['missing_hash'] recipes/ucsc-catuncomment | ['missing_hash'] recipes/ucsc-chainantirepeat | ['missing_hash'] recipes/ucsc-chainfilter | ['missing_hash'] recipes/ucsc-chainmergesort | ['missing_hash'] recipes/ucsc-chainnet | ['missing_hash'] recipes/ucsc-chainprenet | ['missing_hash'] recipes/ucsc-chainsort | ['missing_hash'] recipes/ucsc-chainsplit | ['missing_hash'] recipes/ucsc-chainstitchid | ['missing_hash'] recipes/ucsc-chainswap | ['missing_hash'] recipes/ucsc-chaintoaxt | ['missing_hash'] recipes/ucsc-chaintopsl | ['missing_hash'] recipes/ucsc-chaintopslbasic | ['missing_hash'] recipes/ucsc-checkagpandfa | ['missing_hash'] recipes/ucsc-checkcoveragegaps | ['missing_hash'] recipes/ucsc-checkhgfindspec | ['missing_hash'] recipes/ucsc-checktablecoords | ['missing_hash'] recipes/ucsc-chopfalines | ['missing_hash'] recipes/ucsc-chromgraphfrombin | ['missing_hash'] recipes/ucsc-chromgraphtobin | ['missing_hash'] recipes/ucsc-clustergenes | ['missing_hash'] recipes/ucsc-coltransform | ['missing_hash'] recipes/ucsc-countchars | ['missing_hash'] recipes/ucsc-crtreeindexbed | ['missing_hash'] recipes/ucsc-crtreesearchbed | ['missing_hash'] recipes/ucsc-dbsnoop | ['missing_hash'] recipes/ucsc-dbtrash | ['missing_hash'] recipes/ucsc-estorient | ['missing_hash'] recipes/ucsc-expmatrixtobarchartbed | ['missing_hash'] recipes/ucsc-faalign | ['missing_hash'] recipes/ucsc-facmp | ['missing_hash'] recipes/ucsc-facount | ['missing_hash'] recipes/ucsc-fafilter | ['missing_hash'] recipes/ucsc-fafiltern | ['missing_hash'] recipes/ucsc-fafrag | ['missing_hash'] recipes/ucsc-fanoise | ['missing_hash'] recipes/ucsc-faonerecord | ['missing_hash'] recipes/ucsc-fapolyasizes | ['missing_hash'] recipes/ucsc-farandomize | ['missing_hash'] recipes/ucsc-farc | ['missing_hash'] recipes/ucsc-fasize | ['missing_hash'] recipes/ucsc-fasomerecords | ['missing_hash'] recipes/ucsc-fasplit | ['missing_hash'] recipes/ucsc-fastqstatsandsubsample | ['missing_hash'] recipes/ucsc-fastqtofa | ['missing_hash'] recipes/ucsc-fatofastq | ['missing_hash'] recipes/ucsc-fatotab | ['missing_hash'] recipes/ucsc-fatotwobit | ['missing_hash'] recipes/ucsc-fatotwobit/324 | ['missing_hash'] recipes/ucsc-fatrans | ['missing_hash'] recipes/ucsc-featurebits | ['missing_hash'] recipes/ucsc-fetchchromsizes | ['missing_hash'] recipes/ucsc-findmotif | ['missing_hash'] recipes/ucsc-gaptolift | ['missing_hash'] recipes/ucsc-genepredcheck | ['missing_hash'] recipes/ucsc-genepredfilter | ['missing_hash'] recipes/ucsc-genepredhisto | ['missing_hash'] recipes/ucsc-genepredsinglecover | ['missing_hash'] recipes/ucsc-genepredtobed | ['missing_hash'] recipes/ucsc-genepredtobiggenepred | ['missing_hash'] recipes/ucsc-genepredtofakepsl | ['missing_hash'] recipes/ucsc-genepredtogtf | ['missing_hash'] recipes/ucsc-genepredtomafframes | ['missing_hash'] recipes/ucsc-genepredtoprot | ['missing_hash'] recipes/ucsc-getrna | ['missing_hash'] recipes/ucsc-getrnapred | ['missing_hash'] recipes/ucsc-gff3togenepred | ['missing_hash'] recipes/ucsc-gff3topsl | ['missing_hash'] recipes/ucsc-gmtime | ['missing_hash'] recipes/ucsc-gtftogenepred | ['missing_hash'] recipes/ucsc-headrest | ['missing_hash'] recipes/ucsc-hgbbidblink | ['missing_hash'] recipes/ucsc-hgfakeagp | ['missing_hash'] recipes/ucsc-hgfindspec | ['missing_hash'] recipes/ucsc-hggcpercent | ['missing_hash'] recipes/ucsc-hgloadbed | ['missing_hash'] recipes/ucsc-hgloadchain | ['missing_hash'] recipes/ucsc-hgloadmaf | ['missing_hash'] recipes/ucsc-hgloadnet | ['missing_hash'] recipes/ucsc-hgloadout | ['missing_hash'] recipes/ucsc-hgloadoutjoined | ['missing_hash'] recipes/ucsc-hgloadwiggle | ['missing_hash'] recipes/ucsc-hgspeciesrna | ['missing_hash'] recipes/ucsc-hgsqldump | ['missing_hash'] recipes/ucsc-hgtrackdb | ['missing_hash'] recipes/ucsc-htmlcheck | ['missing_hash'] recipes/ucsc-hubcheck | ['missing_hash'] recipes/ucsc-hubpubliccheck | ['missing_hash'] recipes/ucsc-ixixx | ['missing_hash'] recipes/ucsc-lavtoaxt | ['missing_hash'] recipes/ucsc-lavtopsl | ['missing_hash'] recipes/ucsc-ldhggene | ['missing_hash'] recipes/ucsc-liftover | ['missing_hash'] recipes/ucsc-liftup | ['missing_hash'] recipes/ucsc-linestora | ['missing_hash'] recipes/ucsc-localtime | ['missing_hash'] recipes/ucsc-mafaddirows | ['missing_hash'] recipes/ucsc-mafaddqrows | ['missing_hash'] recipes/ucsc-mafcoverage | ['missing_hash'] recipes/ucsc-maffetch | ['missing_hash'] recipes/ucsc-maffilter | ['missing_hash'] recipes/ucsc-maffrag | ['missing_hash'] recipes/ucsc-maffrags | ['missing_hash'] recipes/ucsc-mafgene | ['missing_hash'] recipes/ucsc-mafmefirst | ['missing_hash'] recipes/ucsc-maforder | ['missing_hash'] recipes/ucsc-mafranges | ['missing_hash'] recipes/ucsc-mafsinregion | ['missing_hash'] recipes/ucsc-mafspecieslist | ['missing_hash'] recipes/ucsc-mafspeciessubset | ['missing_hash'] recipes/ucsc-mafsplit | ['missing_hash'] recipes/ucsc-mafsplitpos | ['missing_hash'] recipes/ucsc-maftoaxt | ['missing_hash'] recipes/ucsc-maftobigmaf | ['missing_hash'] recipes/ucsc-maftopsl | ['missing_hash'] recipes/ucsc-maftosnpbed | ['missing_hash'] recipes/ucsc-maketablelist | ['missing_hash'] recipes/ucsc-maskoutfa | ['missing_hash'] recipes/ucsc-mktime | ['missing_hash'] recipes/ucsc-mrnatogene | ['missing_hash'] recipes/ucsc-netchainsubset | ['missing_hash'] recipes/ucsc-netclass | ['missing_hash'] recipes/ucsc-netfilter | ['missing_hash'] recipes/ucsc-netsplit | ['missing_hash'] recipes/ucsc-netsyntenic | ['missing_hash'] recipes/ucsc-nettoaxt | ['missing_hash'] recipes/ucsc-nettobed | ['missing_hash'] recipes/ucsc-newprog | ['missing_hash'] recipes/ucsc-newpythonprog | ['missing_hash'] recipes/ucsc-nibfrag | ['missing_hash'] recipes/ucsc-nibsize | ['missing_hash'] recipes/ucsc-oligomatch | ['missing_hash'] recipes/ucsc-overlapselect | ['missing_hash'] recipes/ucsc-parafetch | ['missing_hash'] recipes/ucsc-parasync | ['missing_hash'] recipes/ucsc-positionaltblcheck | ['missing_hash'] recipes/ucsc-pslcat | ['missing_hash'] recipes/ucsc-pslcdnafilter | ['missing_hash'] recipes/ucsc-pslcheck | ['missing_hash'] recipes/ucsc-psldropoverlap | ['missing_hash'] recipes/ucsc-pslfilter | ['missing_hash'] recipes/ucsc-pslhisto | ['missing_hash'] recipes/ucsc-pslliftsubrangeblat | ['missing_hash'] recipes/ucsc-pslmap | ['missing_hash'] recipes/ucsc-pslmappostchain | ['missing_hash'] recipes/ucsc-pslmrnacover | ['missing_hash'] recipes/ucsc-pslpairs | ['missing_hash'] recipes/ucsc-pslpartition | ['missing_hash'] recipes/ucsc-pslpostarget | ['missing_hash'] recipes/ucsc-pslpretty | ['missing_hash'] recipes/ucsc-pslrc | ['missing_hash'] recipes/ucsc-pslrecalcmatch | ['missing_hash'] recipes/ucsc-pslreps | ['missing_hash'] recipes/ucsc-pslscore | ['missing_hash'] recipes/ucsc-pslselect | ['missing_hash'] recipes/ucsc-pslsort | ['missing_hash'] recipes/ucsc-pslstats | ['missing_hash'] recipes/ucsc-pslswap | ['missing_hash'] recipes/ucsc-psltobed | ['missing_hash'] recipes/ucsc-psltobigpsl | ['missing_hash'] recipes/ucsc-psltochain | ['missing_hash'] recipes/ucsc-psltopslx | ['missing_hash'] recipes/ucsc-pslxtofa | ['missing_hash'] recipes/ucsc-qacagplift | ['missing_hash'] recipes/ucsc-qactoqa | ['missing_hash'] recipes/ucsc-qactowig | ['missing_hash'] recipes/ucsc-qatoqac | ['missing_hash'] recipes/ucsc-randomlines | ['missing_hash'] recipes/ucsc-rasqlquery | ['missing_hash'] recipes/ucsc-ratolines | ['missing_hash'] recipes/ucsc-ratotab | ['missing_hash'] recipes/ucsc-rmfadups | ['missing_hash'] recipes/ucsc-rowstocols | ['missing_hash'] recipes/ucsc-spacedtotab | ['missing_hash'] recipes/ucsc-splitfile | ['missing_hash'] recipes/ucsc-splitfilebycolumn | ['missing_hash'] recipes/ucsc-sqltoxml | ['missing_hash'] recipes/ucsc-stringify | ['missing_hash'] recipes/ucsc-subchar | ['missing_hash'] recipes/ucsc-subcolumn | ['missing_hash'] recipes/ucsc-taillines | ['missing_hash'] recipes/ucsc-tdbquery | ['missing_hash'] recipes/ucsc-texthistogram | ['missing_hash'] recipes/ucsc-ticktodate | ['missing_hash'] recipes/ucsc-tolower | ['missing_hash'] recipes/ucsc-toupper | ['missing_hash'] recipes/ucsc-transmappsltogenepred | ['missing_hash'] recipes/ucsc-trfbig | ['missing_hash'] recipes/ucsc-twobitdup | ['missing_hash'] recipes/ucsc-twobitinfo | ['missing_hash'] recipes/ucsc-twobitmask | ['missing_hash'] recipes/ucsc-twobittofa | ['missing_hash'] recipes/ucsc-validatefiles | ['missing_hash'] recipes/ucsc-validatemanifest | ['missing_hash'] recipes/ucsc-wigcorrelate | ['missing_hash'] recipes/ucsc-wigtobigwig | ['missing_hash'] recipes/ucsc-wordline | ['missing_hash'] recipes/ucsc-xmlcat | ['missing_hash'] recipes/ucsc-xmltosql | ['missing_hash'] recipes/umi_tools | ['should_be_noarch'] recipes/ushuffle | ['should_be_noarch'] recipes/variantbam | ['uses_git_url'] recipes/varscan/2.3.7 | ['uses_javajdk'] recipes/vawk | ['missing_hash'] recipes/vcflib | ['missing_hash' 'uses_git_url'] recipes/vcftoolbox | ['should_be_noarch'] recipes/verse | ['missing_hash' 'uses_git_url'] recipes/viennarna/2.1.9 | ['missing_tests'] recipes/vnl | ['missing_tests'] recipes/weeder | ['should_be_noarch'] recipes/wkhtmltopdf | ['missing_tests' 'missing_hash'] recipes/workspace | ['should_be_noarch'] recipes/xdg | ['in_other_channels'] recipes/xmlbuilder | ['should_be_noarch'] recipes/xmltramp2 | ['should_be_noarch'] recipes/xsv | ['missing_hash'] recipes/yaggo | ['missing_hash'] recipes/yahmm | ['should_be_noarch'] recipes/yamllint | ['should_be_noarch'] recipes/zifa | ['missing_hash']
(edited to aggregate by recipe and convert to table form for display)