Open corneliusroemer opened 1 month ago
Recipe I encountered this on: https://github.com/bioconda/bioconda-recipes/pull/49102
https://anaconda.org/conda-forge/clangxx_osx-arm64/files lists https://anaconda.org/conda-forge/clangxx_osx-arm64/16.0.6/download/osx-arm64/clangxx_osx-arm64-16.0.6-h54d7cd3_16.conda deployed 1 month and 2 days ago. There are some newer versions deployed earlier today too.
I know, it's super weird - I have no clue what's going on and it's frustrating that in debug mode I get no information about what the spec is the solver is trying to solve :/
I've made a local build with no issue whatsoever on macos-arm64
micromamba create -n vcftools-build --platform osx-arm64 make clangxx autoconf automake libtool pkg-config zlib perl
micromamba activate vcftools-build
bash
wget https://github.com/vcftools/vcftools/archive/v0.1.16.tar.gz
tar xvf v0.1.16.tar.gz
cd vcftools-0.1.16/
./autogen.sh
./configure
make
make install
install_name_tool -add_rpath /opt/homebrew/opt/zlib/lib ./vcftools-0.1.16/src/cpp/vcftools
install_name_tool -add_rpath /opt/homebrew/opt/llvm/lib ./vcftools-0.1.16/src/cpp/vcftools
install_name_tool -add_rpath /opt/homebrew/opt/llvm/lib/c++ ./vcftools-0.1.16/src/cpp/vcftools
$ ./vcftools-0.1.16/src/cpp/vcftools
VCFtools (0.1.16)
© Adam Auton and Anthony Marcketta 2009
Process Variant Call Format files
For a list of options, please go to:
https://vcftools.github.io/man_latest.html
Alternatively, a man page is available, type:
man vcftools
Questions, comments, and suggestions should be emailed to:
vcftools-help@lists.sourceforge.net
I've tried to debug the vcftools recipe locally on my osx-arm64 laptop.
I installed bioconda-utils, checkout out to the branch of bioconda-recipes and ran:
But the result is confusing:
I don't know how to proceed. I'd like to see what environment was requested to be installed, but even when running with debug loglevel no such information is actually printed :/
Would be nice if in debug mode conda/mamba was run likewise with verbosity flags.