The pull request introduces several changes across multiple files. In the GitHub Actions workflow file .github/workflows/GithubActionTests.yml, the GITHUB_TOKEN environment variable has been added to the Run tests steps for both the test-linux and test-macosx jobs. This addition enables the jobs to access GitHub API functionalities during test execution, particularly when determining whether to run tests based on file modifications.
In the bioconda_utils/bioconda_utils-requirements.txt file, various dependencies have been updated to newer versions, including conda, conda-build, conda-index, conda-package-streaming, pyaml, networkx, aiofiles, aioftp, and cachetools. The boa dependency has been commented out, indicating its removal from the requirements.
The versioneer.py file has undergone modifications to improve configuration parsing and error management. The deprecated SafeConfigParser has been replaced with ConfigParser, and the readfp() method has been updated to read_file(). Enhanced error handling has been implemented to manage specific exceptions related to configuration file reading. Overall, these changes focus on enhancing the functionality and reliability of the respective components.
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Walkthrough
The pull request introduces several changes across multiple files. In the GitHub Actions workflow file
.github/workflows/GithubActionTests.yml, theGITHUB_TOKENenvironment variable has been added to theRun testssteps for both thetest-linuxandtest-macosxjobs. This addition enables the jobs to access GitHub API functionalities during test execution, particularly when determining whether to run tests based on file modifications.In the
bioconda_utils/bioconda_utils-requirements.txtfile, various dependencies have been updated to newer versions, includingconda,conda-build,conda-index,conda-package-streaming,pyaml,networkx,aiofiles,aioftp, andcachetools. Theboadependency has been commented out, indicating its removal from the requirements.The
versioneer.pyfile has undergone modifications to improve configuration parsing and error management. The deprecatedSafeConfigParserhas been replaced withConfigParser, and thereadfp()method has been updated toread_file(). Enhanced error handling has been implemented to manage specific exceptions related to configuration file reading. Overall, these changes focus on enhancing the functionality and reliability of the respective components.Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?
❤️ Share
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