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biocore-ntnu / epic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
http://bioepic.readthedocs.io
MIT License
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Question about paired-end reads #15

Closed JFourquet closed 8 years ago

JFourquet commented 8 years ago

Hi,

I would like to know if EPIC is able to manage paired-end ChIP-seq reads. Thanks a lot for your answer,

J. Fourquet

endrebak commented 8 years ago

Not currently, but it is a feature I am trying to add right now. If you have some paired end data (chip and input, just the first 10k lines), this would greatly speed up the process.🙂 What I am doing (actually, failing to do) atm is creating fake paired end chip data. See #4

endrebak commented 8 years ago

Now it does. See #4 👍

JFourquet commented 8 years ago

Hi, With a little delay, thanks a lot for your answers ! J. Fourquet