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biocore-ntnu / epic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
http://bioepic.readthedocs.io
MIT License
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Default parameters for gap #28

Closed Estel-Kitsune closed 7 years ago

Estel-Kitsune commented 8 years ago

Hi,

In the doc, the default parameter for the "window size" is 200, and the default parameter for "gap" is 3.

However, "gap" is supposed to be a multiple of "window size". Should you change the default gap value for 400, 600..? Or does that mean that by default the gap is 3 * 200 = 600?

Thanks, /Estelle

endrebak commented 8 years ago

The latter. Perhaps this needs to be made more clear in the docs somewhere.