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biocore-ntnu / epic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
http://bioepic.readthedocs.io
MIT License
31 stars 6 forks source link

How to direct output to a file #37

Closed abhisheksinghnl closed 6 years ago

abhisheksinghnl commented 8 years ago

Hi,

Strangely, I cannot save the output file.

I cannot even find a parameter that says something on naming output file :(

The output just displays on screen

How can I direct the output to files.

The command that I am using is

epic -t ChIPseq_H3K9me2.bed -c ChIPseq_input.bed -gn rn6

Thank you in advance.

ksiklenka commented 8 years ago

epic -t ChIPseq_H3K9me2.bed -c ChIPseq_input.bed -gn rn6 > dir/output.txt

endrebak commented 8 years ago

You can use the redirection operator ">" like so:

epic -t ChIPseq_H3K9me2.bed -c ChIPseq_input.bed -gn rn6 > yourfile.csv It is great that you asked about this, I should add a note in the docs.

On Fri, Aug 12, 2016 at 2:41 PM, abhisheksinghnl notifications@github.com wrote:

Hi,

Strangely, I cannot save the output file.

I cannot even find a parameter that says something on naming output file :(

The output just displays on screen

How can I direct the output to files.

The command that I am using is

epic -t ChIPseq_H3K9me2.bed -c ChIPseq_input.bed -gn rn6

Thank you in advance.

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