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biocore-ntnu / epic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
http://bioepic.readthedocs.io
MIT License
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Use unique filenames for --sum-bigwig option #53

Closed quantumdot closed 6 years ago

quantumdot commented 7 years ago

Running epic on multiple datasets with the same parameter directory location for --sum-bigwig will overwrite output of a previous run on a different dataset. It looks like the output file just get called chip_sum.bw and input_sum.bw. Can you change this to have a more unique name, perhaps by taking a --name parameter on the command line for an experiment name?

endrebak commented 7 years ago

I might do that in the future when I have more time. I see it as a preferable option to my current way of doing it, but for now you could just create a different folder for each experiment, so they are called experiment1/chip_sum.bigwig and experiment2/chip_sum.bigwig and so on.

endrebak commented 6 years ago

There are now three bigwig options (chip, input, log2fc) in 0.2.2 which is out in pypi (and I'm adding it to bioconda now).