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biocore-ntnu / epic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
http://bioepic.readthedocs.io
MIT License
31 stars 6 forks source link

Recommend publication #72

Open Bohdan-Khomtchouk opened 6 years ago

Bohdan-Khomtchouk commented 6 years ago

Re:

When is your paper coming out?

Dunno. We do not want to write a methods paper, but rather just include a section about epic in an appropriate biology paper sometime.

In its current state, epic seems to be a body of work ideally suited as a publication in OUP's Bioinformatics, as they generally publish papers featuring extensive benchmark work (as you've done) that push the state-of-the-art further in important areas like this. Thus, I would highly recommend considering publishing a standalone methods paper for epic, possibly also including an R implementation in the same manuscript (epicR).

endrebak commented 6 years ago

We were contemplating that :) I am working on a preprint for bioRxiv.