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biocore-ntnu / epic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
http://bioepic.readthedocs.io
MIT License
31 stars 6 forks source link

Repair effective_sizes/dm6_50.txt #75

Closed palmercd closed 6 years ago

palmercd commented 6 years ago

For unclear reasons, the effective size estimate for dm6/50 is incorrect (current estimate of effective fraction is 0.139, actual is 0.879). It does not represent the output of the genome.snakefile run for that combination of parameters, even bearing in mind version changes since the original run which cause minor differences for the other outputs. This modification replaces the dm6_50.txt file with the current output of the pipeline for this file.

coveralls commented 6 years ago

Coverage Status

Coverage decreased (-3.0%) to 69.981% when pulling cab7ce9d70a4f738aa724f724ec7c92a50c73d4c on palmercd:palmercd-dm6-effective-sizes-1 into 6da14a1ba21e6013557f8ed18e93403d3d793ec7 on biocore-ntnu:master.

endrebak commented 6 years ago

Deeply appreciated. I should have a fresh look at the Snakefile and the egses. I was experiencing some hiccups with running and downloading the data, so the files might be corrupted.