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biocore-ntnu / epic2

Ultraperformant reimplementation of SICER
https://doi.org/10.1093/bioinformatics/btz232
MIT License
55 stars 9 forks source link

is v0.0.52 available on bioconda? #56

Closed tingliu-uhn closed 2 years ago

tingliu-uhn commented 2 years ago

Hi, I wonder if epic2 v0.0.52 is available on bioconda? We tried both updating and re-installing the epic2 package, but the version was still 0.0.41, and the "--guess-bampe" option that we would like to use seemed unavailable on 0.0.41 version. Our environment is Linux bash 4.2.46(2) with python 3.6. Thanks!

tingliu-uhn commented 2 years ago

got the issue fixed, switched into the conda-forge channel and also updated the version of libgcc-ng package, which reported as a conflict

endrebak commented 2 years ago

I just upload to PyPI and conda-bot takes care of adding it to bioconda. So it should be there. I'm happy you found the solution. Hope epic2 works for your use case :)

On Fri, Nov 26, 2021 at 7:58 PM tingliu-uhn @.***> wrote:

got the issue fixed, switched into the conda-forge channel and also updated the version of libgcc-ng package, which reported as a conflict

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tingliu-uhn commented 2 years ago

thanks!