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biocore-ntnu / epic2

Ultraperformant reimplementation of SICER
https://doi.org/10.1093/bioinformatics/btz232
MIT License
56 stars 9 forks source link

Segmentation fault #6

Closed Victor21v closed 5 years ago

Victor21v commented 6 years ago

Hi!

I cannot run the program as I get "Segmentation fault" error while trying to execute it:

epic2 -t Treatment.bam -c Control.bam -gn sacCer3 > Try.txt

"Using an effective genome length of ~9 * 1e6

Parsing ChIP file(s): Treatment.bam

Valid ChIP reads: 74610

Score threshold: 8.169

Number of tags in a window: 3 Segmentation fault "

Any clue?

Thanks in advance. Víctor-

endrebak commented 6 years ago

Thanks, I have noticed a similar thing on some of my machines. I have attempted to fix it, will see if I can upload a fix today :)

endrebak commented 6 years ago

Thanks for bothering to report this. I noticed segfaults happening on macOS, not linux.

Could you please try pip install epic2==0.0.11? If it does not work, please post the output log. If it does work, please tell me :)

Victor21v commented 6 years ago

Hi! I will try it as soon as possible. Thanks for the quick response :)