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biocore-ntnu / epic2

Ultraperformant reimplementation of SICER
https://doi.org/10.1093/bioinformatics/btz232
MIT License
55 stars 9 forks source link

built-in genome list #60

Open nermah1 opened 2 years ago

nermah1 commented 2 years ago

Hi, thanks for developing and updating epic2.

I wanted to see what other built-in genomes available in epic2 but can't find the list. For example, does it have TAIR10 (Arabidopsis) genome? If so, what's the exact word following --gn?

endrebak commented 2 years ago

Here are the chromsizes:

https://github.com/biocore-ntnu/epic2/tree/master/epic2/chromsizes

I do not think so. Is TAIR10 on UCSC?

On Thu, May 26, 2022 at 5:39 AM nermah1 @.***> wrote:

Hi, thanks for developing and updating epic2.

I wanted to see what other built-in genomes available in epic2 but can't find the list. For example, does it have TAIR10 (Arabidopsis) genome? If so, what's the exact word following --gn?

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