Hi, i´m having the next error when I try to run epic2-df:
Running epic2 on KO. Traceback (most recent call last): File "/home/mulan/anaconda3/envs/BED_BAM/bin/epic2-df", line 332, in <module> bins_counts_ko = _main(args) File "/home/mulan/anaconda3/envs/BED_BAM/lib/python3.7/site-packages/epic2/main.py", line 35, in _main effective_genome_length, chromsizes = egl_and_chromsizes(args) File "epic2/src/genome_info.pyx", line 280, in epic2.src.genome_info.egl_and_chromsizes File "epic2/src/genome_info.pyx", line 111, in epic2.src.genome_info.find_readlength ValueError: invalid literal for int() with base 10: '182.9782626415492'
endrebak
commented
1 year ago
Hi, i´m having the next error when I try to run epic2-df:
Running epic2 on KO. Traceback (most recent call last): File "/home/mulan/anaconda3/envs/BED_BAM/bin/epic2-df", line 332, in <module> bins_counts_ko = _main(args) File "/home/mulan/anaconda3/envs/BED_BAM/lib/python3.7/site-packages/epic2/main.py", line 35, in _main effective_genome_length, chromsizes = egl_and_chromsizes(args) File "epic2/src/genome_info.pyx", line 280, in epic2.src.genome_info.egl_and_chromsizes File "epic2/src/genome_info.pyx", line 111, in epic2.src.genome_info.find_readlength ValueError: invalid literal for int() with base 10: '182.9782626415492'The command i use is:
epic2-df -tk ZT4_HFD_blkremoved.bed -tw ZT4_CD_blkremoved.bed -ok ZT4_KO.bed -ow ZT4_WT.bed -gn mm10
I´m currently working with the conda version of epic2, thanks for your attention!