Primary processing revitalized - Githubissues

biocore / American-Gut

American Gut open-access data and IPython notebooks

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Primary processing revitalized #161

Closed wasade closed 8 years ago

wasade commented 8 years ago

[x] setup runipys similar to IAB
[x] tie into .travis.yml, and set export AG_TESTING=True
[x] get sequence and metadata (#162)
[x] resolve filtering notebook (#163)
[x] resolve OTU picking notebook (#164)
[x] prepare for meta analyses (#165)
[x] resolve alpha diversity analysis notebook (#166)
[x] resolve beta diversity analysis notebook (#167)
[x] resolve taxonomy summaries notebook (#168)
[x] resolve categories collapse (#169)
[x] resolve generating of participant results notebook (#170)
[ ] resolve project wide summary

jwdebelius commented 8 years ago

Project wide summary is redundant with #61