Updated Plotting and Comparisons

biocore / American-Gut

American Gut open-access data and IPython notebooks

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Updated Plotting and Comparisons #9

Closed jwdebelius closed 11 years ago

jwdebelius commented 11 years ago

Comparisons now include calculating sample abundance and absence; formatting for LaTeX and Raw Text is updated.

Plots can be generated with or without legends and have no outlines.

wasade commented 11 years ago

Currently getting:

Traceback (most recent call last):
  File "/home/mcdonadt/ResearchWork/American-Gut/scripts/generate_otu_signifigance_tables_AGP.py", line 735, in <module>
    sample_ids = samples_to_analyze)
  File "/home/mcdonadt/ResearchWork/American-Gut/scripts/generate_otu_signifigance_tables_AGP.py", line 658, in generate_otu_signifigance_tables_AGP
    rare_formatted.append(taxa_to_list(\
NameError: global name 'taxa_to_list' is not defined