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biocore / BIRDMAn

Bayesian Inferential Regression for Differential Microbiome Analysis
BSD 3-Clause "New" or "Revised" License
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Enabling cluster support #11

Closed mortonjt closed 3 years ago

mortonjt commented 3 years ago

MCMC will take ages to run if computation is performed on a single compute node (negative binomial will take ~24 hours on 1000 microbes, 1000 samples on 1 core).

So getting large-scale cluster support is going to a huge enabler here. See https://jobqueue.dask.org/en/latest/generated/dask_jobqueue.SLURMCluster.html

gibsramen commented 3 years ago

Marking this as closed via #30. If specific problems arise or new functionality is requested feel free to open a new issue.