biocore / DEICODE

Robust Aitchison PCA from sparse count data
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Duplicated Scripts #28

Closed cameronmartino closed 5 years ago

cameronmartino commented 5 years ago

The code in _rpca.py is almost an exact copy to the code in the q2-plugin in _method.py. Rather than having these as separate scripts that need parallel updates, it would be beneficial to have one method that can be run by command line or q2.

This was first brought up in PR #27.

https://github.com/biocore/DEICODE/blob/242050ad8208d7ef5db6625e9954896241f4abac/deicode/scripts/_rpca.py#L1-L68