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biocore / DEICODE

Robust Aitchison PCA from sparse count data
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Add frequency filter. #45

Closed cameronmartino closed 4 years ago

cameronmartino commented 5 years ago

Currently, the default filtering for features is done by taking the sum of counts across all samples. However, in some cases, a user would want to look at the number of samples the feature has a count greater than one (probably as a percentage 0-100). It would be great to have this frequency filter built into the interface as a secondary option to the sum filtering.

cameronmartino commented 4 years ago

closing this as it should be addressed in PR #54