converting otu_table.csv format to otu_table.qza

biocore / DEICODE

Robust Aitchison PCA from sparse count data

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converting otu_table.csv format to otu_table.qza #61

Open Hesham999666 opened 3 years ago

Hesham999666 commented 3 years ago

I am new to microbiome data analysis

I am trying to use DEICODE to generate distance matrix. Is there way to convert otu_table generated by R and dada2 pipeline otu_table (as qza file formate ) to so I can use it in Qiime2/ DEICODE ?

cameronmartino commented 2 years ago

This is a better question for the QIIME2 forum. See here for a description on importing data: https://forum.qiime2.org/t/importing-csv-to-qza/3920

There is also a standalone which can take a biom table as input.