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biocore / DEICODE

Robust Aitchison PCA from sparse count data
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DEICODE Package for R Programming Language #62

Open erfanshekarriz opened 2 years ago

erfanshekarriz commented 2 years ago

Hello!

First of all, thank you for clearly addressing the issue of compositionality and the high probability of artifacts in ordination methodology.

I wanted to ask if there would be any R versions of this package coming anytime soon. Since most microbiome analysts do their downstream exploratory analysis in R and that there are no existing packages in R to do robust PCA on microbiome data, I have trust it would be very useful and widely used by the community.

Is there any chance that we might have that in the future?

Best,

Erfan

cameronmartino commented 2 years ago

Hi @erfanshekarriz,

There is now an R version of the package. It is here: https://github.com/vegandevs/vegan/pull/458