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biocore / Platypus-Conquistador

Confirming specific taxonomic groups within your samples.
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Move command line interfaces to use click #9

Closed ElDeveloper closed 9 years ago

ElDeveloper commented 9 years ago

There's a tiny problem with this, if we move to click it doesn't seem like there's an easy way to auto-generate HTML docs from the command line interface. If this is a sacrifice we are ok with doing, let's go for it, otherwise we can:

antgonza commented 9 years ago

The use command line interface use cases should be really simple so HTML should be fine. We should also add a comment on the contributing file so changes on the CLI should be reflected on the HTML CLI file.

ElDeveloper commented 9 years ago

Ok, so click is ok? Tutorials can still be written in RST, it's just that the auto-generated docs, like these http://qiime.org/scripts/add_alpha_to_mapping_file.html , can't be made (without some custom code) for click-based scripts.

On (Apr-13-15| 6:36), Antonio Gonzalez wrote:

The use command line interface use cases should be really simple so HTML should be fine. We should also add a comment on the contributing file so changes on the CLI should be reflected on the HTML CLI file.

Reply to this email directly or view it on GitHub: https://github.com/biocore/Platypus-Conquistador/issues/9#issuecomment-92354042

antgonza commented 9 years ago

Yup, I think is fine.

ElDeveloper commented 9 years ago

Thanks for confirming!

On (Apr-13-15| 8:46), Antonio Gonzalez wrote:

Yup, I think is fine.

Reply to this email directly or view it on GitHub: https://github.com/biocore/Platypus-Conquistador/issues/9#issuecomment-92408018