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biocore / biom-format

The Biological Observation Matrix (BIOM) Format Project
http://biom-format.org
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add to_anndata conversion #845

Closed adamgayoso closed 4 years ago

adamgayoso commented 4 years ago

Adds to_anndata method to Table with optional anndata dependency.

wasade commented 4 years ago

@adamgayoso the failure is unrelated. I'm exploring this in #846.

adamgayoso commented 4 years ago

Thanks @wasade. Do you need anything else from me?

wasade commented 4 years ago

Hi @adamgayoso, I don't believe so.

wasade commented 4 years ago

@adamgayoso, sorry for the delay. The build failures with pandas are now fixed, but it looks like there may be some flake8 issues with this PR. Able to fix by chance?

adamgayoso commented 4 years ago

@wasade Done. Not so happy with what I had to do with the unused import in the test, not sure if you know another way.

wasade commented 4 years ago

Thank you!! I think that's fine, an alternative would be to specify # noqa, but effect is the same here.