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biocore / biom-format

The Biological Observation Matrix (BIOM) Format Project
http://biom-format.org
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Adjacency to biom #850

Closed wasade closed 4 years ago

wasade commented 4 years ago

Fixes #823

Provides support for parsing adjacency data into biom.Table. The key functional addition here is that these data often are described in terms of identifier / identifier / value (e.g., "featureX\tsampleY\t3.0"), and this provides support to map those data directly into a sparse matrix and subsequent representation as biom.Table.

coveralls commented 4 years ago

Coverage Status

Coverage increased (+0.2%) to 86.325% when pulling 0f86a9c803da9ff792a78e64e8825ab6588c1350 on wasade:adjacency-to-biom into 80fe25f43295ad51b3c0ee2fc6b789cb6196178b on biocore:master.

wasade commented 4 years ago

woo! thanks @ElDeveloper!