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biocore / biom-format

The Biological Observation Matrix (BIOM) Format Project
http://biom-format.org
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it would be nice to easily remove blanks #870

Open wasade opened 2 years ago

wasade commented 2 years ago

Something like biom filter-blanks -i foo -o bar, where any sample containing "blank" case insensitive is dropped

antgonza commented 2 years ago

+1, note that different labs record blanks differently so having by default "blank" and being able to overwrite this parameter might be good ... but this might be too much as at the end of the day we have Q2 for "fancier" things.

wasade commented 2 years ago

Makes sense, thanks!

On Mar 14, 2022, at 6:38 AM, Antonio Gonzalez @.***> wrote:

+1, note that different labs record blanks differently so having by default "blank" and being able to overwrite this parameter might be good ... but this might be too much as at the end of the day we have Q2 for "fancier" things.

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